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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46844 (92 seq.)
>W131176874
ARKJ01000025
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
629927
630015
+
Leu
TAA
[ENA]
¡û
>W1711413541
MGWI01000005
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
14493
14405
-
Leu
TAA
[ENA]
¡û
>W131229111
AUGN01000007
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
41694
41782
+
Leu
TAA
[ENA]
¡û
>W131229204
AUGP01000028
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
39376
39464
+
Leu
TAA
[ENA]
¡û
>C171016676
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
2856892
2856980
+
Leu
TAA
-
¡û
>C171067463
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1855320
1855232
-
Leu
TAA
-
¡û
>C171067464
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1853437
1853351
-
Leu
TAA
-
¡û
>C171067465
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1853010
1852922
-
Leu
TAA
-
¡û
>W131002835
AGZL01000031
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
174057
173969
-
Leu
TAA
[ENA]
¡û
>W131002841
AGZL01000032
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
88
2
-
Leu
TAA
[ENA]
¡û
>W131002869
AGZL01000043
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
8
94
+
Leu
TAA
[ENA]
¡û
>W131002870
AGZL01000043
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
721
807
+
Leu
TAA
[ENA]
¡û
>W131002871
AGZL01000043
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
1195
1281
+
Leu
TAA
[ENA]
¡û
>w023499
AAXX01000002
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
252187
252277
+
Leu
TAA
[ENA]
¡û
>W141008168
AGZK01000035
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
244285
244197
-
Leu
TAA
[ENA]
¡û
>W141008175
AGZK01000037
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
315
227
-
Leu
TAA
[ENA]
¡û
>WENV180208614
OBAJ01008976
[OBAJ] marine metagenome; Coastal water
128
42
-
Leu
TAA
[ENA]
¢þ
>WENV180284537
OBID01053371
[OBID] metagenome; sludge
652
738
+
Leu
TAA
[ENA]
¢þ
>WENV181173020
OEIV011136464
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
170
84
-
Leu
TAA
[ENA]
¢þ
>WENV181836411
OGVJ01006540
[OGVJ] freshwater metagenome; freshwater
1089
1175
+
Leu
TAA
[ENA]
¢þ
>W141188482
AYMS01000051
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
101841
101929
+
Leu
TAA
[ENA]
¡û
>W141188483
AYMS01000051
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
121761
121849
+
Leu
TAA
[ENA]
¡û
>W141188484
AYMS01000051
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
122188
122276
+
Leu
TAA
[ENA]
¡û
>WENV183736934
PJUD01000106
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
88004
88090
+
Leu
TAA
[ENA]
¢þ
>WENV183736935
PJUD01000106
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
88151
88237
+
Leu
TAA
[ENA]
¢þ
>WENV183738704
PJUE01000117
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
87921
88007
+
Leu
TAA
[ENA]
¢þ
>WENV183738705
PJUE01000117
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
88068
88154
+
Leu
TAA
[ENA]
¢þ
>WENV183739927
PJUF01000078
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
87947
88033
+
Leu
TAA
[ENA]
¢þ
>WENV183739928
PJUF01000078
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
88094
88180
+
Leu
TAA
[ENA]
¢þ
>WENV170559411
CXWL01122121
[CXWL] groundwater metagenome; biofilm material
132
220
+
Leu
TAA
[ENA]
¢þ
>WENV002112
AACY020058858
Marine microbial communities from Global Ocean Sampling (GOS)
1030
940
-
Leu
TAA
[ENA]
>C181202227
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3588098
3588012
-
Leu
TAA
-
¡û
>C191153043
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1780798
1780712
-
Leu
TAA
-
¡û
>C191153044
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1780085
1779999
-
Leu
TAA
-
¡û
>C191153045
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1776793
1776707
-
Leu
TAA
-
¡û
>C191153046
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1776366
1776280
-
Leu
TAA
-
¡û
>W141702878
JMLU01000001
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
173072
172986
-
Leu
TAA
[ENA]
¡û
>W1910577970
JUIW01000012
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
88028
87942
-
Leu
TAA
[ENA]
¡û
>W1910728175
MGWJ01000010
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5193
5279
+
Leu
TAA
[ENA]
¡û
>W1911243232
NSGJ01000003
Bacteroidota
Myroides sp. N17-2 [NSGJ]
3028
2940
-
Leu
TAA
[ENA]
¡û
>W1911243233
NSGJ01000003
Bacteroidota
Myroides sp. N17-2 [NSGJ]
435
349
-
Leu
TAA
[ENA]
¡û
>W1911243263
NSGJ01000037
Bacteroidota
Myroides sp. N17-2 [NSGJ]
32688
32774
+
Leu
TAA
[ENA]
¡û
>W1911243264
NSGJ01000037
Bacteroidota
Myroides sp. N17-2 [NSGJ]
53540
53628
+
Leu
TAA
[ENA]
¡û
>SRA1004775
SRR006906.134338
metagenomic water samples (SRP000427)
48
136
+
Leu
TAA
[SRA]
>W1810694859
QLMI01000002
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
188589
188503
-
Leu
TAA
[ENA]
¡û
>W1810695769
QLST01000002
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
205798
205712
-
Leu
TAA
[ENA]
¡û
>W1810695888
QLSV01000007
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
32973
33059
+
Leu
TAA
[ENA]
¡û
>W1810762861
QQAR01000011
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
102620
102534
-
Leu
TAA
[ENA]
¡û
>C151066978
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1930638
1930552
-
Leu
TAA
[Ensembl]
¡û
>C151066979
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1929925
1929839
-
Leu
TAA
[Ensembl]
¡û
>C151066980
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1926633
1926547
-
Leu
TAA
[Ensembl]
¡û
>C151066981
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1926206
1926118
-
Leu
TAA
[Ensembl]
¡û
>C151072934
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
644401
644313
-
Leu
TAA
[Ensembl]
¡û
>C151072935
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
643688
643602
-
Leu
TAA
[Ensembl]
¡û
>C151072936
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
643215
643129
-
Leu
TAA
[Ensembl]
¡û
>C151072937
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
642788
642700
-
Leu
TAA
[Ensembl]
¡û
>W1511526866
JYGZ01000009
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
14092
14180
+
Leu
TAA
[ENA]
¡û
>W1511526867
JYGZ01000009
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
14822
14910
+
Leu
TAA
[ENA]
¡û
>C161042832
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
2856866
2856954
+
Leu
TAA
-
¡û
>C161059454
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1875964
1875876
-
Leu
TAA
[Ensembl]
¡û
>C161059455
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1874081
1873993
-
Leu
TAA
[Ensembl]
¡û
>C161059456
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1862599
1862511
-
Leu
TAA
[Ensembl]
¡û
>W121009073
AGEC01000002
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
521062
521148
+
Leu
TAA
[ENA]
¡û
>W121009074
AGEC01000002
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
521775
521861
+
Leu
TAA
[ENA]
¡û
>W121009080
AGEC01000003
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
8
96
+
Leu
TAA
[ENA]
¡û
>W121009156
AGED01000008
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
168191
168103
-
Leu
TAA
[ENA]
¡û
>W121009161
AGED01000009
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
808
722
-
Leu
TAA
[ENA]
¡û
>W121009162
AGED01000009
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
95
9
-
Leu
TAA
[ENA]
¡û
>W121009227
AGEE01000005
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
279330
279244
-
Leu
TAA
[ENA]
¡û
>W1610061460
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
392
478
+
Leu
TAA
[ENA]
¡û
>W1610061461
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
819
907
+
Leu
TAA
[ENA]
¡û
>W1610061518
BCMQ01000013
Bacteroidota
Myroides odoratimimus [BCMQ]
776
690
-
Leu
TAA
[ENA]
¡û
>W1610535023
JRLV01000016
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
94101
94013
-
Leu
TAA
[ENA]
¡û
>W1610535083
JRLX01000002
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
64344
64256
-
Leu
TAA
[ENA]
¡û
>W1610535151
JRLY01000077
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
42
130
+
Leu
TAA
[ENA]
¡û
>W1710059125
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
392
478
+
Leu
TAA
[ENA]
¡û
>W1710059126
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
819
907
+
Leu
TAA
[ENA]
¡û
>W1710059183
BCMQ01000013
Bacteroidota
Myroides odoratimimus [BCMQ]
776
690
-
Leu
TAA
[ENA]
¡û
>W1710541073
FNYA01000007
Bacteroidota
Flavobacterium terrigena [FNYA]
164145
164233
+
Leu
TAA
[ENA]
¡û
>W1710551290
FOFY01000008
Bacteroidota
Myroides profundi [FOFY]
113025
112937
-
Leu
TAA
[ENA]
¡û
>W1710551291
FOFY01000008
Bacteroidota
Myroides profundi [FOFY]
112312
112226
-
Leu
TAA
[ENA]
¡û
>W1710551292
FOFY01000008
Bacteroidota
Myroides profundi [FOFY]
111839
111753
-
Leu
TAA
[ENA]
¡û
>W1710551293
FOFY01000008
Bacteroidota
Myroides profundi [FOFY]
111412
111324
-
Leu
TAA
[ENA]
¡û
>W1710574096
FOYA01000001
Bacteroidota
Flavobacterium akiainvivens [FOYA]
78544
78632
+
Leu
TAA
[ENA]
¡û
>W1710591221
FRBO01000008
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
361
449
+
Leu
TAA
[ENA]
¡û
>W1710591242
FRBO01000011
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
1864
1778
-
Leu
TAA
[ENA]
¡û
>W1710591243
FRBO01000011
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
1151
1065
-
Leu
TAA
[ENA]
¡û
>W1710591244
FRBO01000011
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
678
590
-
Leu
TAA
[ENA]
¡û
>W1710593811
FRYK01000001
Bacteroidota
Flavobacterium cucumis [FRYK]
371372
371284
-
Leu
TAA
[ENA]
¡û
>W1710637259
JRLV01000016
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
94101
94013
-
Leu
TAA
[ENA]
¡û
>W1710637319
JRLX01000002
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
64344
64256
-
Leu
TAA
[ENA]
¡û
>W1710637387
JRLY01000077
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
42
130
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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