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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46849 (61 seq.)
>C171057586
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
519578
519666
+
Leu
TAA
-
¡û
>C171088926
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
519431
519519
+
Leu
TAA
-
¡û
>W131058741
ANFU01000006
Mycoplasmatota
Mycoplasma feriruminatoris G5847 [ANFU]
19708
19620
-
Leu
TAA
[ENA]
¡û
>W131061548
ANIV01000016
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
14384
14296
-
Leu
TAA
[ENA]
¡û
>C013250
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
497057
497145
+
Leu
TAA
[Ensembl]
¡û
>C013878
BX293980
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. PG1 [BX293980]
649680
649592
-
Leu
TAA
[Ensembl]
¡û
>w025285
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
470411
470501
+
Leu
TAA
[ENA]
¡û
>W141450941
JFAE01000010
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
25056
25144
+
Leu
TAA
[ENA]
¡û
>W141455513
JFDO01000016
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
27763
27851
+
Leu
TAA
[ENA]
¡û
>C191217984
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
497575
497663
+
Leu
TAA
-
¡û
>C191224085
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
616651
616563
-
Leu
TAA
-
¡û
>C191224115
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
618738
618650
-
Leu
TAA
-
¡û
>C191224145
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
617022
616934
-
Leu
TAA
-
¡û
>C191224175
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
608108
608020
-
Leu
TAA
-
¡û
>C191224204
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
617247
617159
-
Leu
TAA
-
¡û
>C191224234
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
619666
619578
-
Leu
TAA
-
¡û
>C191224264
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
612655
612567
-
Leu
TAA
-
¡û
>C191224294
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
612104
612016
-
Leu
TAA
-
¡û
>C191224322
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
608996
608908
-
Leu
TAA
-
¡û
>C191224352
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
615457
615369
-
Leu
TAA
-
¡û
>C191224381
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
612138
612050
-
Leu
TAA
-
¡û
>C191224411
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
613169
613081
-
Leu
TAA
-
¡û
>C191224441
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
620439
620351
-
Leu
TAA
-
¡û
>C191224471
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
618224
618136
-
Leu
TAA
-
¡û
>C191224500
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
620306
620218
-
Leu
TAA
-
¡û
>C191224530
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
620439
620351
-
Leu
TAA
-
¡û
>C191224560
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
610995
610907
-
Leu
TAA
-
¡û
>C191224590
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
613940
613852
-
Leu
TAA
-
¡û
>C191224620
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
620310
620222
-
Leu
TAA
-
¡û
>C191224649
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
617819
617731
-
Leu
TAA
-
¡û
>W141700874
JMJI01000025
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
1556
1468
-
Leu
TAA
[ENA]
¡û
>W1910597445
LATJ01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598113
LAUU01000008
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
138195
138107
-
Leu
TAA
[ENA]
¡û
>W1910598129
LAUV01000018
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598160
LAUW01000022
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598201
LAUX01000159
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
11
99
+
Leu
TAA
[ENA]
¡û
>W1910598223
LAUY01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa [LAUY]
25220
25308
+
Leu
TAA
[ENA]
¡û
>SRA1014777
SRR023845.309857
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
184
+
Leu
TAA
[SRA]
>C151015551
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
519619
519707
+
Leu
TAA
[Ensembl]
¡û
>C151064933
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
651882
651794
-
Leu
TAA
[Ensembl]
¡û
>C151094679
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
620439
620351
-
Leu
TAA
-
¡û
>C151102618
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
519465
519553
+
Leu
TAA
[Ensembl]
¡û
>C151102889
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
519407
519495
+
Leu
TAA
[Ensembl]
¡û
>C151102918
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
519568
519656
+
Leu
TAA
[Ensembl]
¡û
>C10109490
CP002107
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale [CP002107]
660722
660634
-
Leu
TAA
[Ensembl]
¡û
>C11114582
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
266133
266221
+
Leu
TAA
[Ensembl]
¡û
>C11114612
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
497802
497890
+
Leu
TAA
[Ensembl]
¡û
>C11114819
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
611795
611707
-
Leu
TAA
[Ensembl]
¡û
>W1511508405
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
971647
971559
-
Leu
TAA
[ENA]
¡û
>W11141013
AENG01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
519578
519666
+
Leu
TAA
[ENA]
¡û
>W1511565159
LAEW01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B237 [LAEW]
660187
660099
-
Leu
TAA
[ENA]
¡û
>W1511565190
LAEX01000007
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Afade [LAEX]
50858
50770
-
Leu
TAA
[ENA]
¡û
>W1511594884
LBMF01000004
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
28310
28398
+
Leu
TAA
[ENA]
¡û
>C121001677
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
620440
620352
-
Leu
TAA
-
¡û
>C121016897
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
682088
682000
-
Leu
TAA
[Ensembl]
¡û
>C161033065
CP011260
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben1 [CP011260]
637918
637830
-
Leu
TAA
-
¡û
>C161033094
CP011261
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben50 [CP011261]
642397
642309
-
Leu
TAA
-
¡û
>C161033124
CP011262
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben181 [CP011262]
636696
636608
-
Leu
TAA
-
¡û
>C161033153
CP011263
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben326 [CP011263]
628641
628553
-
Leu
TAA
-
¡û
>C161033182
CP011264
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben468 [CP011264]
643445
643357
-
Leu
TAA
-
¡û
>C161071661
CP014346
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides T1/44 [CP014346]
672538
672626
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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