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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46876 (61 seq.)
>W1710906949
LNOK01000015
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
55886
55971
+
Ser
TGA
[ENA]
¡û
>C171048213
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
3498782
3498695
-
Ser
TGA
-
¡û
>C171074114
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
233742
233829
+
Ser
TGA
-
¡û
>W131188342
ASAN01000050
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
19969
20056
+
Ser
TGA
[ENA]
¡û
>W131241100
BARD01000021
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
19917
20004
+
Ser
TGA
[ENA]
¡û
>W141074365
ASYJ01000048
Bacteroidota
Elizabethkingia anophelis NUH6 [ASYJ]
25348
25263
-
Ser
TGA
[ENA]
¡û
>WENV181385239
OFRI01052542
[OFRI] wastewater metagenome; Exp Tend VB 90WW
395
310
-
Ser
TGA
[ENA]
¢þ
>W141168424
AXUZ01000009
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
294423
294336
-
Ser
TGA
[ENA]
¡û
>W141168435
AXUZ01000012
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
94595
94510
-
Ser
TGA
[ENA]
¡û
>WENV183726929
PJTO01000634
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
8054
7969
-
Ser
TGA
[ENA]
¢þ
>WENV183728261
PJTQ01000006
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
257672
257757
+
Ser
TGA
[ENA]
¢þ
>WENV183730895
PJTS01001857
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
3566
3651
+
Ser
TGA
[ENA]
¢þ
>WENV183731060
PJTS01006023
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1781
1867
+
Ser
TGA
[ENA]
¢þ
>WENV183731584
PJTT01000035
[PJTT] soil metagenome; Soil (2) enriched on wood chips
65150
65065
-
Ser
TGA
[ENA]
¢þ
>WENV183731821
PJTT01000215
[PJTT] soil metagenome; Soil (2) enriched on wood chips
81946
82033
+
Ser
TGA
[ENA]
¢þ
>WENV170303899
CESI01002508
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
692
605
-
Ser
TGA
[ENA]
¢þ
>WENV170325224
CEST01004115
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
197
112
-
Ser
TGA
[ENA]
¢þ
>WENV170326447
CESU01001705
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
97
184
+
Ser
TGA
[ENA]
¢þ
>WENV170598751
FUWD010047926
[FUWD] metagenome; unknown
429
514
+
Ser
TGA
[ENA]
¢þ
>WENV170609631
FUWD011454221
[FUWD] metagenome; unknown
269
354
+
Ser
TGA
[ENA]
¢þ
>WENV170626846
FUWD013229782
[FUWD] metagenome; unknown
41577
41662
+
Ser
TGA
[ENA]
¢þ
>C181016497
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
3498771
3498686
-
Ser
TGA
-
¡û
>C181074449
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
4368176
4368089
-
Ser
TGA
-
¡û
>C181074480
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
59426
59341
-
Ser
TGA
-
¡û
>C181074481
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
12227
12140
-
Ser
TGA
-
¡û
>C191115135
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
392334
392421
+
Ser
TGA
-
¡û
>C191115192
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
642326
642239
-
Ser
TGA
-
¡û
>C191115261
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
844086
844173
+
Ser
TGA
-
¡û
>C191115317
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
1091541
1091454
-
Ser
TGA
-
¡û
>C191115624
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
324601
324686
+
Ser
TGA
-
¡û
>C191115625
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
325169
325254
+
Ser
TGA
-
¡û
>C191115626
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
510970
511055
+
Ser
TGA
-
¡û
>C191115755
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
5489652
5489565
-
Ser
TGA
-
¡û
>C191115756
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
5283907
5283822
-
Ser
TGA
-
¡û
>C191157519
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
1726029
1726114
+
Ser
TGA
-
¡û
>C191157553
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
1886709
1886624
-
Ser
TGA
-
¡û
>C191210014
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
2576349
2576262
-
Ser
TGA
-
¡û
>C191210015
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
2370604
2370519
-
Ser
TGA
-
¡û
>W09123587
ACHA01000105
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
3619
3704
+
Ser
TGA
[ENA]
¡û
>W09123594
ACHA01000117
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
23722
23809
+
Ser
TGA
[ENA]
¡û
>W1910342488
FTQZ01000010
Bacteroidota
Elizabethkingia anophelis [FTQZ]
3011
2926
-
Ser
TGA
[ENA]
¡û
>W1911218391
NRQS01000002
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
358109
358024
-
Ser
TGA
[ENA]
¡û
>W1911218392
NRQS01000002
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
356418
356333
-
Ser
TGA
[ENA]
¡û
>W1911218393
NRQS01000002
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
210142
210057
-
Ser
TGA
[ENA]
¡û
>W1911647669
QAJQ01000026
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
172971
173060
+
Ser
TGA
[ENA]
¡û
>W1810156085
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1898252
1898167
-
Ser
TGA
[ENA]
¡û
>W1810156086
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1897992
1897907
-
Ser
TGA
[ENA]
¡û
>W1810475443
QAJA01000478
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
361
446
+
Ser
TGA
[ENA]
¡û
>W1810543360
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
540642
540557
-
Ser
TGA
[ENA]
¡û
>W1810543372
QDKG01000003
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
5818
5733
-
Ser
TGA
[ENA]
¡û
>W1810594630
QGDC01000009
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
156170
156085
-
Ser
TGA
[ENA]
¡û
>W1810761076
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
244151
244064
-
Ser
TGA
[ENA]
¡û
>W1810917785
QWDE01000001
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
154672
154587
-
Ser
TGA
[ENA]
¡û
>W1610083542
CBYF010000037
Bacteroidota
Elizabethkingia anophelis [CBYF]
157875
157960
+
Ser
TGA
[ENA]
¡û
>W121086487
AKJY01000091
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
25047
25134
+
Ser
TGA
[ENA]
¡û
>W1610765963
LNOK01000015
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
55886
55971
+
Ser
TGA
[ENA]
¡û
>W1610867527
LQXS01000001
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
900332
900247
-
Ser
TGA
[ENA]
¡û
>W1610867537
LQXS01000002
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
188437
188524
+
Ser
TGA
[ENA]
¡û
>W1710088559
CBYF010000037
Bacteroidota
Elizabethkingia anophelis [CBYF]
157875
157960
+
Ser
TGA
[ENA]
¡û
>W1710608348
FXAU01000003
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
300368
300453
+
Ser
TGA
[ENA]
¡û
>W1710608349
FXAU01000003
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
452099
452014
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK