This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468831 (123 seq.)
>W131238737
BAIC02000330
Bacillota
Clostridiales bacterium VE202-15 [BAIC]
458
532
+
Ala
TGC
[ENA]
¡û
>w016946
AAQT01000150
Bacillota
Lachnoclostridium phytofermentans ISDg [AAQT]
1914
1991
+
Ala
TGC
[ENA]
¡û
>w016942
AAQT01000125
Bacillota
Lachnoclostridium phytofermentans ISDg [AAQT]
5502
5579
+
Ala
TGC
[ENA]
¡û
>w016916
AAQT01000022
Bacillota
Lachnoclostridium phytofermentans ISDg [AAQT]
57986
58063
+
Ala
TGC
[ENA]
¡û
>WENV180155283
OAUU01015824
[OAUU] human gut metagenome; faeces
402
328
-
Ala
TGC
[ENA]
¢þ
>WENV180189280
OAWX01033146
[OAWX] human gut metagenome; faeces
51
125
+
Ala
TGC
[ENA]
¢þ
>WENV180216312
OBAQ01056858
[OBAQ] human gut metagenome; human gut
112
186
+
Ala
TGC
[ENA]
¢þ
>WENV180218509
OBAR01065937
[OBAR] human gut metagenome; human gut
59
133
+
Ala
TGC
[ENA]
¢þ
>WENV180227617
OBBU01140925
[OBBU] human gut metagenome; human gut
35
109
+
Ala
TGC
[ENA]
¢þ
>WENV180303896
OBJF01162396
[OBJF] human gut metagenome; feces
78
152
+
Ala
TGC
[ENA]
¢þ
>WENV180330297
OBKV01038269
[OBKV] human gut metagenome; human gut
527
453
-
Ala
TGC
[ENA]
¢þ
>WENV180405427
OBTM01006303
[OBTM] human gut metagenome; ENVO:feces
101
174
+
Ala
TGC
[ENA]
¢þ
>WENV180436285
OBWM01068058
[OBWM] human gut metagenome; faeces
110
36
-
Ala
TGC
[ENA]
¢þ
>WENV180456469
OBXQ01009763
[OBXQ] human gut metagenome; faeces
158
84
-
Ala
TGC
[ENA]
¢þ
>WENV180467082
OBYG01075420
[OBYG] human gut metagenome; faeces
155
81
-
Ala
TGC
[ENA]
¢þ
>WENV180495371
OCAA01063469
[OCAA] human gut metagenome; faeces
203
129
-
Ala
TGC
[ENA]
¢þ
>WENV180508321
OCAT01094830
[OCAT] human gut metagenome; faeces
155
81
-
Ala
TGC
[ENA]
¢þ
>WENV180511714
OCGZ01027213
[OCGZ] human gut metagenome; human gut
383
309
-
Ala
TGC
[ENA]
¢þ
>WENV180513385
OCHA01032409
[OCHA] human gut metagenome; human gut
557
483
-
Ala
TGC
[ENA]
¢þ
>WENV180520296
OCHE01034731
[OCHE] human gut metagenome; human gut
793
719
-
Ala
TGC
[ENA]
¢þ
>WENV180527061
OCHI01170867
[OCHI] human gut metagenome; human gut
78
152
+
Ala
TGC
[ENA]
¢þ
>WENV180542841
OCHT01024701
[OCHT] human gut metagenome; human gut
407
333
-
Ala
TGC
[ENA]
¢þ
>WENV180544971
OCIS01010448
[OCIS] human gut metagenome; human gut
900
826
-
Ala
TGC
[ENA]
¢þ
>WENV180558197
OCJY01011436
[OCJY] human gut metagenome; human gut
706
632
-
Ala
TGC
[ENA]
¢þ
>WENV180603051
OCPR01028201
[OCPR] human gut metagenome; human gut
334
408
+
Ala
TGC
[ENA]
¢þ
>WENV180618119
OCQA01234305
[OCQA] human gut metagenome; human gut
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV180628122
OCQO01043019
[OCQO] human gut metagenome; human gut
411
337
-
Ala
TGC
[ENA]
¢þ
>WENV180648748
OCSJ01099755
[OCSJ] human gut metagenome; human gut
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV180667212
OCVV011230172
[OCVV] gut metagenome; gut
246
319
+
Ala
TGC
[ENA]
¢þ
>WENV180667214
OCVV011230172
[OCVV] gut metagenome; gut
246
319
+
Ala
TGC
[ENA]
¢þ
>WENV180667760
OCVV011243470
[OCVV] gut metagenome; gut
269
343
+
Ala
TGC
[ENA]
¢þ
>WENV180667762
OCVV011243470
[OCVV] gut metagenome; gut
269
343
+
Ala
TGC
[ENA]
¢þ
>WENV180677887
OCVV011815390
[OCVV] gut metagenome; gut
156
82
-
Ala
TGC
[ENA]
¢þ
>WENV180677888
OCVV011815390
[OCVV] gut metagenome; gut
156
82
-
Ala
TGC
[ENA]
¢þ
>WENV180677953
OCVV011830660
[OCVV] gut metagenome; gut
80
153
+
Ala
TGC
[ENA]
¢þ
>WENV180677954
OCVV011830660
[OCVV] gut metagenome; gut
80
153
+
Ala
TGC
[ENA]
¢þ
>WENV180681194
OCVV012750752
[OCVV] gut metagenome; gut
86
12
-
Ala
TGC
[ENA]
¢þ
>WENV180681196
OCVV012750752
[OCVV] gut metagenome; gut
86
12
-
Ala
TGC
[ENA]
¢þ
>WENV180681372
OCVV012762622
[OCVV] gut metagenome; gut
201
275
+
Ala
TGC
[ENA]
¢þ
>WENV180681374
OCVV012762622
[OCVV] gut metagenome; gut
201
275
+
Ala
TGC
[ENA]
¢þ
>WENV180686743
OCVV012894256
[OCVV] gut metagenome; gut
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV180686744
OCVV012894256
[OCVV] gut metagenome; gut
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV180702699
ODEE01134832
[ODEE] human metagenome; G_DNA_Stool
109
35
-
Ala
TGC
[ENA]
¢þ
>WENV180816911
ODJP01115206
[ODJP] human metagenome; G_DNA_Tongue dorsum
155
82
-
Ala
TGC
[ENA]
¢þ
>WENV180818801
ODJQ01086080
[ODJQ] human metagenome; G_DNA_Stool
75
149
+
Ala
TGC
[ENA]
¢þ
>WENV180884243
ODMC01066037
[ODMC] human metagenome; G_DNA_Tongue dorsum
155
82
-
Ala
TGC
[ENA]
¢þ
>WENV180897353
ODNI01017483
[ODNI] human metagenome; G_DNA_Tongue dorsum
1390
1317
-
Ala
TGC
[ENA]
¢þ
>WENV180957288
ODUK01026244
[ODUK] human metagenome; G_DNA_Stool
255
329
+
Ala
TGC
[ENA]
¢þ
>WENV180966249
ODUP01137045
[ODUP] human metagenome; G_DNA_Stool
171
97
-
Ala
TGC
[ENA]
¢þ
>WENV181018426
ODWT01018764
[ODWT] human metagenome; G_DNA_Stool
355
429
+
Ala
TGC
[ENA]
¢þ
>WENV181035390
ODXO01037069
[ODXO] human metagenome; G_DNA_Stool
398
472
+
Ala
TGC
[ENA]
¢þ
>WENV181037336
ODXP01039583
[ODXP] human metagenome; G_DNA_Stool
519
445
-
Ala
TGC
[ENA]
¢þ
>WENV181062501
ODYN01228248
[ODYN] human metagenome; G_DNA_Stool
155
81
-
Ala
TGC
[ENA]
¢þ
>WENV181087212
OEAY01017844
[OEAY] human metagenome; G_DNA_Tongue dorsum
1397
1324
-
Ala
TGC
[ENA]
¢þ
>WENV181100066
OECI01060203
[OECI] human metagenome; G_DNA_Stool
355
429
+
Ala
TGC
[ENA]
¢þ
>WENV181106364
OEED01127313
[OEED] human metagenome; G_DNA_Tongue dorsum
155
82
-
Ala
TGC
[ENA]
¢þ
>WENV181128563
OEFW01224215
[OEFW] human metagenome; G_DNA_Stool
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV181149184
OEHT01032271
[OEHT] human metagenome; G_DNA_Stool
840
766
-
Ala
TGC
[ENA]
¢þ
>WENV181197050
OEQZ01014639
[OEQZ] metagenome; Caecal content
588
513
-
Ala
TGC
[ENA]
¢þ
>WENV181304402
OFHW01091271
[OFHW] metagenome; Caecal content
88
163
+
Ala
TGC
[ENA]
¢þ
>WENV181427462
OGCQ01099293
[OGCQ] human gut metagenome; human gut
388
314
-
Ala
TGC
[ENA]
¢þ
>WENV181504347
OGGJ01059800
[OGGJ] metagenome; Human gut stool
383
309
-
Ala
TGC
[ENA]
¢þ
>WENV181513858
OGGU01045087
[OGGU] metagenome; Human gut stool
263
337
+
Ala
TGC
[ENA]
¢þ
>WENV181528138
OGHK01058851
[OGHK] metagenome; Human gut stool
263
337
+
Ala
TGC
[ENA]
¢þ
>WENV181554304
OGIR01024648
[OGIR] metagenome; Human gut stool
359
433
+
Ala
TGC
[ENA]
¢þ
>WENV181636405
OGMZ01018750
[OGMZ] metagenome; Human gut stool
141
215
+
Ala
TGC
[ENA]
¢þ
>WENV181702368
OGPH01064195
[OGPH] human gut metagenome; faeces
144
218
+
Ala
TGC
[ENA]
¢þ
>WENV181932672
OGYR01004328
[OGYR] human gut metagenome; faeces
830
904
+
Ala
TGC
[ENA]
¢þ
>WENV181984739
OHAI01051074
[OHAI] human gut metagenome; faeces
560
485
-
Ala
TGC
[ENA]
¢þ
>WENV182030585
OHCR01028229
[OHCR] human gut metagenome; feces
263
337
+
Ala
TGC
[ENA]
¢þ
>WENV182089596
OHGZ01038406
[OHGZ] human gut metagenome; feces
263
337
+
Ala
TGC
[ENA]
¢þ
>WENV182387748
OIEA01027985
[OIEA] human gut metagenome; feces
264
338
+
Ala
TGC
[ENA]
¢þ
>WENV182413596
OIFY01002825
[OIFY] human gut metagenome; human gut
926
852
-
Ala
TGC
[ENA]
¢þ
>WENV182451962
OIMB01011974
[OIMB] human gut metagenome; human gut
1187
1113
-
Ala
TGC
[ENA]
¢þ
>WENV182469520
OIPD01024152
[OIPD] human gut metagenome; human gut
396
322
-
Ala
TGC
[ENA]
¢þ
>WENV182469873
OIPE01016824
[OIPE] human gut metagenome; human gut
836
762
-
Ala
TGC
[ENA]
¢þ
>WENV182471138
OIPI01008707
[OIPI] human gut metagenome; human gut
74
148
+
Ala
TGC
[ENA]
¢þ
>C08003677
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
77966
78040
+
Ala
TGC
[Ensembl]
¡û
>C08003686
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
447972
448046
+
Ala
TGC
[Ensembl]
¡û
>C08003723
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
3497463
3497389
-
Ala
TGC
[Ensembl]
¡û
>WENV182601355
OJJI01009646
[OJJI] metagenome; faeces
727
653
-
Ala
TGC
[ENA]
¢þ
>WENV182603259
OJJL01001882
[OJJL] metagenome; faeces
1559
1633
+
Ala
TGC
[ENA]
¢þ
>WENV182653099
OJMH01103275
[OJMH] human gut metagenome; feces
155
81
-
Ala
TGC
[ENA]
¢þ
>WENV182880075
OKRZ01080692
[OKRZ] human gut metagenome; faeces
78
152
+
Ala
TGC
[ENA]
¢þ
>WENV182916749
OKTT01028324
[OKTT] human gut metagenome; feces
528
454
-
Ala
TGC
[ENA]
¢þ
>WENV182990515
OLAM01015584
[OLAM] human gut metagenome; human gut
396
322
-
Ala
TGC
[ENA]
¢þ
>WENV183032044
OLFX01043075
[OLFX] human gut metagenome; faeces
396
470
+
Ala
TGC
[ENA]
¢þ
>WENV183085717
OLJF01009147
[OLJF] metagenome; faeces
2845
2771
-
Ala
TGC
[ENA]
¢þ
>WENV183086835
OLJF01092496
[OLJF] metagenome; faeces
392
466
+
Ala
TGC
[ENA]
¢þ
>WENV183114081
OLNP01106593
[OLNP] human gut metagenome; faeces
141
215
+
Ala
TGC
[ENA]
¢þ
>WENV183187333
OLPO01013184
[OLPO] human gut metagenome; faeces
2304
2231
-
Ala
TGC
[ENA]
¢þ
>WENV183317791
OLVT01025517
[OLVT] human gut metagenome; faeces
138
213
+
Ala
TGC
[ENA]
¢þ
>WENV183336715
OLWH01041072
[OLWH] human gut metagenome; feces
554
480
-
Ala
TGC
[ENA]
¢þ
>WENV183429514
OMBO01036283
[OMBO] human gut metagenome; feces
7
81
+
Ala
TGC
[ENA]
¢þ
>WENV183493855
OMGJ01007209
[OMGJ] human gut metagenome; human gut
479
553
+
Ala
TGC
[ENA]
¢þ
>WENV170004811
AJWY01003943
[AJWY] human gut metagenome; lean human gut
705
631
-
Ala
TGC
[ENA]
¢þ
>WENV170091767
CEAG01023479
[CEAG] gut metagenome; human stools
521
595
+
Ala
TGC
[ENA]
¢þ
>WENV170637809
JFBN01362959
[JFBN] chicken gut metagenome; ceca of Broiler chicken
39
113
+
Ala
TGC
[ENA]
¢þ
>WENV170638327
JFBN01460866
[JFBN] chicken gut metagenome; ceca of Broiler chicken
120
45
-
Ala
TGC
[ENA]
¢þ
>W141733985
JNLG01000001
Bacillota
Lachnoclostridium phytofermentans KNHs2132 [JNLG]
2770251
2770325
+
Ala
TGC
[ENA]
¡û
>W141734006
JNLG01000001
Bacillota
Lachnoclostridium phytofermentans KNHs2132 [JNLG]
1206978
1206904
-
Ala
TGC
[ENA]
¡û
>W141734015
JNLG01000001
Bacillota
Lachnoclostridium phytofermentans KNHs2132 [JNLG]
720380
720306
-
Ala
TGC
[ENA]
¡û
>W141734286
JNLM01000001
Bacillota
Lachnoclostridium phytofermentans KNHs212 [JNLM]
3231315
3231389
+
Ala
TGC
[ENA]
¡û
>W141734307
JNLM01000001
Bacillota
Lachnoclostridium phytofermentans KNHs212 [JNLM]
1667837
1667763
-
Ala
TGC
[ENA]
¡û
>W141734316
JNLM01000001
Bacillota
Lachnoclostridium phytofermentans KNHs212 [JNLM]
1181278
1181204
-
Ala
TGC
[ENA]
¡û
>W141734502
JNLQ01000002
Bacillota
Butyrivibrio sp. AE3004 [JNLQ]
3065605
3065532
-
Ala
TGC
[ENA]
¡û
>W141734510
JNLQ01000002
Bacillota
Butyrivibrio sp. AE3004 [JNLQ]
2816644
2816571
-
Ala
TGC
[ENA]
¡û
>W141807147
JPOF01000001
Bacillota
Lachnoclostridium phytofermentans [JPOF]
289259
289333
+
Ala
TGC
[ENA]
¡û
>W141807183
JPOF01000003
Bacillota
Lachnoclostridium phytofermentans [JPOF]
1562424
1562498
+
Ala
TGC
[ENA]
¡û
>W1810403115
PYII01000078
Bacillota
Enterocloster lavalensis KCTC 15153 [PYII]
569
495
-
Ala
TGC
[ENA]
¡û
>W1810876564
QUGT01000047
Bacillota
Clostridium sp. AF18-27 [QUGT]
2394
2468
+
Ala
TGC
[ENA]
¡û
>ENV09002506
ADGC01003519
Wallaby gut metagenome MeugComb_C1
1673
1599
-
Ala
TGC
[ENA]
¡û
>ENV09002836
ADGC01032593
Wallaby gut metagenome MeugComb_C1
512
440
-
Ala
TGC
[ENA]
¡û
>C11118595
CP003040
Bacillota
Roseburia hominis A2-183 [CP003040]
27342
27416
+
Ala
TGC
[Ensembl]
¡û
>C11118603
CP003040
Bacillota
Roseburia hominis A2-183 [CP003040]
627771
627845
+
Ala
TGC
[Ensembl]
¡û
>C11118619
CP003040
Bacillota
Roseburia hominis A2-183 [CP003040]
1037261
1037335
+
Ala
TGC
[Ensembl]
¡û
>C11118635
CP003040
Bacillota
Roseburia hominis A2-183 [CP003040]
3095541
3095467
-
Ala
TGC
[Ensembl]
¡û
>W1511577913
LARA01000067
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
710
636
-
Ala
TGC
[ENA]
¡û
>W1511580180
LARI01000159
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
402
328
-
Ala
TGC
[ENA]
¡û
>W1610100852
CYZJ01000002
Bacillota
Roseburia hominis [CYZJ]
355502
355576
+
Ala
TGC
[ENA]
¡û
>WENV084880
BABA01026912
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
294
217
-
Ala
TGC
[ENA]
>W1710103607
CYZJ01000002
Bacillota
Roseburia hominis [CYZJ]
355502
355576
+
Ala
TGC
[ENA]
¡û
>W1710507697
FMVL01000017
Bacillota
Lachnospiraceae bacterium XBB2008 [FMVL]
20816
20743
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK