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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468909 (42 seq.)
>W1711109437
LTUQ01000144
Actinomycetota
Actinomyces sp. HMSC065F12 [LTUQ]
107107
107179
+
Gln
CTG
[ENA]
¡û
>W1711492345
MKKH01000078
Actinomycetota
Cellulosimicrobium sp. CUA-896 [MKKH]
67000
67074
+
Gln
CTG
[ENA]
¡û
>W1711503120
MKTI01000005
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
343566
343494
-
Gln
CTG
[ENA]
¡û
>W1711750735
MUNE01000010
Actinomycetota
Streptomyces milbemycinicus [MUNE]
6251
6325
+
Gln
CTG
[ENA]
¡û
>W1712109198
NJFD01000002
Actinomycetota
Mobiluncus mulieris [NJFD]
2360660
2360588
-
Gln
CTG
[ENA]
¡û
>C171081596
CP018627
Actinomycetota
Streptomyces hygroscopicus XM201 [CP018627]
8528352
8528426
+
Gln
CTG
-
¡û
>C171094716
CP019458
Actinomycetota
Streptomyces autolyticus CGMCC0516 [CP019458]
7598198
7598272
+
Gln
CTG
-
¡û
>WENV180018630
FTAE01000148
[FTAE] metagenome; soil
4563
4491
-
Gln
CTG
[ENA]
¢þ
>WENV180289226
OBIR01000018
[OBIR] human gut metagenome; Skin biopsy
41078
41006
-
Gln
CTG
[ENA]
¢þ
>WENV181806355
OGSK01002630
[OGSK] human gut metagenome; fecal sample 2 from infant 5
1555
1627
+
Gln
CTG
[ENA]
¢þ
>W141279541
JAGJ01000008
Actinomycetota
Cellulosimicrobium cellulans J36 [JAGJ]
46984
47058
+
Gln
CTG
[ENA]
¡û
>WENV182818994
OKAA01000091
[OKAA] human gut metagenome; human gut
27575
27647
+
Gln
CTG
[ENA]
¢þ
>WENV182831008
OKEC01001987
[OKEC] human gut metagenome; human gut
1044
1116
+
Gln
CTG
[ENA]
¢þ
>WENV182831174
OKEE01000060
[OKEE] human gut metagenome; human gut
44655
44727
+
Gln
CTG
[ENA]
¢þ
>WENV183636590
OOKJ01000014
[OOKJ] human gut metagenome; Material from the bottom lip
55034
54962
-
Gln
CTG
[ENA]
¢þ
>C191020460
CP022545
Actinomycetota
Streptomyces sp. 11-1-2 [CP022545]
7673354
7673426
+
Gln
CTG
-
¡û
>C191174141
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
3102939
3102867
-
Gln
CTG
-
¡û
>W141808821
JPQW01000190
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
26844
26918
+
Gln
CTG
[ENA]
¡û
>W1910179240
BJHV01000001
Actinomycetota
Streptomyces antimycoticus NBRC 12839 [BJHV]
7176916
7176988
+
Gln
CTG
[ENA]
¡û
>W1910179301
BJHW01000001
Actinomycetota
Streptomyces violaceusniger NBRC 13459 [BJHW]
7859451
7859523
+
Gln
CTG
[ENA]
¡û
>W1910498658
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
174068
173996
-
Gln
CTG
[ENA]
¡û
>W1910549296
FZPE01000001
Actinomycetota
Micrococcales bacterium KH10 [FZPE]
618565
618637
+
Gln
CTG
[ENA]
¡û
>W1910550336
FZQV01000005
Actinomycetota
Ruaniaceae bacterium KH17 [FZQV]
6205
6277
+
Gln
CTG
[ENA]
¡û
>W1910870383
NCSM01000030
Actinomycetota
Streptomyces sp. NBS 14/10 [NCSM]
42449
42521
+
Gln
CTG
[ENA]
¡û
>W1911679578
QHKJ01000099
Actinomycetota
Streptomyces sp. WAC 00631 [QHKJ]
7142
7214
+
Gln
CTG
[ENA]
¡û
>W1810173013
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5633909
5633983
+
Gln
CTG
[ENA]
¡û
>W1810195835
PKSK01001585
Actinomycetota
Streptomyces sp. DJ [PKSK]
1780
1708
-
Gln
CTG
[ENA]
¡û
>W1810325965
PUET01000002
Actinomycetota
Streptomyces xinghaiensis OlgR2-7A [PUET]
560808
560880
+
Gln
CTG
[ENA]
¡û
>W1810573685
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
4762872
4762800
-
Gln
CTG
[ENA]
¡û
>W1810884964
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
3130755
3130683
-
Gln
CTG
[ENA]
¡û
>C10108043
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1099018
1099092
+
Gln
CTG
[Ensembl]
¡û
>C161003954
CP006567
Actinomycetota
Streptomyces rapamycinicus NRRL 5491 [CP006567]
4124406
4124332
-
Gln
CTG
-
¡û
>W1610029600
AXCY01000060
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
13238
13166
-
Gln
CTG
[ENA]
¡û
>W1610051878
BBHK01001187
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
395
323
-
Gln
CTG
[ENA]
¡û
>W1610053548
BBOU01000046
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOU]
26494
26420
-
Gln
CTG
[ENA]
¡û
>W1610053688
BBOY01000337
Actinomycetota
Streptomyces hygroscopicus endus [BBOY]
5599
5673
+
Gln
CTG
[ENA]
¡û
>W1710017467
ASQP01000083
Actinomycetota
Streptomyces sparsogenes DSM 40356 [ASQP]
14012
13938
-
Gln
CTG
[ENA]
¡û
>W1710026970
AXCY01000060
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
13238
13166
-
Gln
CTG
[ENA]
¡û
>W1710048256
BBHK01001187
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
395
323
-
Gln
CTG
[ENA]
¡û
>W1710049926
BBOU01000046
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOU]
26494
26420
-
Gln
CTG
[ENA]
¡û
>W1710050066
BBOY01000337
Actinomycetota
Streptomyces hygroscopicus endus [BBOY]
5599
5673
+
Gln
CTG
[ENA]
¡û
>W1710607365
FXAA01000009
Actinomycetota
Cellulosimicrobium cellulans J1 [FXAA]
90068
90142
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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