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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46892 (62 seq.)
>W1711092554
LTEE01000070
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
12161
12075
-
Ser
GGA
[ENA]
¡û
>W1711093859
LTFJ01000013
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
320043
319957
-
Ser
GGA
[ENA]
¡û
>W1711095142
LTGN01000045
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
14662
14576
-
Ser
GGA
[ENA]
¡û
>W1711096263
LTHP01000062
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
23554
23640
+
Ser
GGA
[ENA]
¡û
>W1711096328
LTHQ01000038
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
28666
28752
+
Ser
GGA
[ENA]
¡û
>W1711097001
LTIG01000043
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
160641
160727
+
Ser
GGA
[ENA]
¡û
>W1711097564
LTIU01000043
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
182
96
-
Ser
GGA
[ENA]
¡û
>W1711098041
LTJF01000024
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
27285
27371
+
Ser
GGA
[ENA]
¡û
>W1711098540
LTJR01000001
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
8632
8718
+
Ser
GGA
[ENA]
¡û
>W1711099079
LTKD01000042
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
28676
28762
+
Ser
GGA
[ENA]
¡û
>W1711099342
LTKK01000023
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
191
105
-
Ser
GGA
[ENA]
¡û
>W1711102288
LTNP01000026
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
24191
24277
+
Ser
GGA
[ENA]
¡û
>W1711102304
LTNQ01000007
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
4934
4848
-
Ser
GGA
[ENA]
¡û
>W1711102392
LTNR01000068
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
36856
36942
+
Ser
GGA
[ENA]
¡û
>W1711102421
LTNS01000021
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
8979
9065
+
Ser
GGA
[ENA]
¡û
>W1711102499
LTNT01000036
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
177
91
-
Ser
GGA
[ENA]
¡û
>W1711102506
LTNU01000004
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
8978
9064
+
Ser
GGA
[ENA]
¡û
>W1711102583
LTNV01000043
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
75069
75155
+
Ser
GGA
[ENA]
¡û
>W1711103281
LTOO01000019
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
4923
4837
-
Ser
GGA
[ENA]
¡û
>W1711103433
LTOS01000012
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
181
95
-
Ser
GGA
[ENA]
¡û
>W1711107008
LTSJ01000023
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
194
108
-
Ser
GGA
[ENA]
¡û
>W1711110035
LTVE01000002
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
25799
25885
+
Ser
GGA
[ENA]
¡û
>W1711112799
LTXS01000025
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
207885
207971
+
Ser
GGA
[ENA]
¡û
>W1711113422
LTYH01000015
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
34357
34271
-
Ser
GGA
[ENA]
¡û
>W1711114828
LTZQ01000003
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
139840
139926
+
Ser
GGA
[ENA]
¡û
>W1711114946
LTZS01000036
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
177
91
-
Ser
GGA
[ENA]
¡û
>W1711186019
LWNW01000017
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
12212
12124
-
Ser
GGA
[ENA]
¡û
>W1711186811
LWON01000009
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
32069
32155
+
Ser
GGA
[ENA]
¡û
>W1711187913
LWPW01000100
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
6740
6654
-
Ser
GGA
[ENA]
¡û
>W1711427594
MIFV01000006
Actinomycetota
Corynebacterium amycolatum [MIFV]
25996
26082
+
Ser
GGA
[ENA]
¡û
>W1711507481
MKXS01000005
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
140215
140301
+
Ser
GGA
[ENA]
¡û
>W1711717108
MTGK01000013
Actinomycetota
Corynebacterium jeikeium [MTGK]
17598
17510
-
Ser
GGA
[ENA]
¡û
>W1711724026
MTPT01000037
Actinomycetota
Corynebacterium amycolatum [MTPT]
25672
25758
+
Ser
GGA
[ENA]
¡û
>W131000444
AGEM01000005
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
225964
226050
+
Ser
GGA
[ENA]
¡û
>C005946
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
2353195
2353283
+
Ser
GGA
[Ensembl]
¡û
>WENV180554252
OCJN01000033
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
82094
82008
-
Ser
GGA
[ENA]
¢þ
>WENV181326404
OFLL01000322
[OFLL] metagenome; faeces
8868
8954
+
Ser
GGA
[ENA]
¢þ
>WENV182645997
OJLZ01020848
[OJLZ] metagenome; surface
738
824
+
Ser
GGA
[ENA]
¢þ
>WENV182646366
OJMA01005491
[OJMA] metagenome; surface
205
119
-
Ser
GGA
[ENA]
¢þ
>WENV183087820
OLJO01002820
[OLJO] human gut metagenome; human gut
596
682
+
Ser
GGA
[ENA]
¢þ
>W141452929
JFCH01000008
Actinomycetota
Corynebacterium jeikeium [JFCH]
344
256
-
Ser
GGA
[ENA]
¡û
>W141453199
JFCM01000041
Actinomycetota
Corynebacterium jeikeium [JFCM]
21624
21536
-
Ser
GGA
[ENA]
¡û
>W141453274
JFCO01000004
Actinomycetota
Corynebacterium jeikeium [JFCO]
22592
22504
-
Ser
GGA
[ENA]
¡û
>W141453425
JFCR01000001
Actinomycetota
Corynebacterium jeikeium [JFCR]
174
86
-
Ser
GGA
[ENA]
¡û
>C181056549
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
2097010
2097096
+
Ser
GGA
-
¡û
>C181214790
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
378078
377990
-
Ser
GGA
-
¡û
>C191111884
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
222012
222098
+
Ser
GGA
-
¡û
>W09114642
ABZU01000008
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
142
56
-
Ser
GGA
[ENA]
¡û
>W1910226199
FMTZ01000022
Actinomycetota
Corynebacterium jeikeium [FMTZ]
75981
76069
+
Ser
GGA
[ENA]
¡û
>W1810187626
PKHS01000007
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
36026
36112
+
Ser
GGA
[ENA]
¡û
>W1810187661
PKHT01000006
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
343
257
-
Ser
GGA
[ENA]
¡û
>C151013224
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
183056
183144
+
Ser
GGA
-
¡û
>C151039858
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1382682
1382768
+
Ser
GGA
[Ensembl]
¡û
>W10106893
ACYW01000065
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
13959
14047
+
Ser
GGA
[ENA]
¡û
>W11109182
ACYW01000065
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
13959
14047
+
Ser
GGA
[ENA]
¡û
>W1511439000
JUNC01000036
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
13306
13394
+
Ser
GGA
[ENA]
¡û
>W1511442770
JUSD01000026
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
27413
27499
+
Ser
GGA
[ENA]
¡û
>W1511457816
JVIP01000039
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
1530
1444
-
Ser
GGA
[ENA]
¡û
>W1511463617
JVOW01000031
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
1536
1450
-
Ser
GGA
[ENA]
¡û
>W1511464318
JVPT01000055
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
16174
16088
-
Ser
GGA
[ENA]
¡û
>W1511469454
JVVM01000015
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
26167
26253
+
Ser
GGA
[ENA]
¡û
>W1511476427
JWEP01000039
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
25625
25539
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK