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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468935 (85 seq.)
>W1711581218
MNTV01000023
Alphaproteobacteria
Azospirillum sp. 51_20 [MNTV]
25584
25659
+
Thr
CGT
[ENA]
¡û
>WENV180201334
OBAF01001542
[OBAF] human gut metagenome; human gut
12969
13044
+
Thr
CGT
[ENA]
¢þ
>WENV180213013
OBAO01000272
[OBAO] human gut metagenome; human gut
25672
25747
+
Thr
CGT
[ENA]
¢þ
>WENV180215132
OBAQ01000207
[OBAQ] human gut metagenome; human gut
54348
54273
-
Thr
CGT
[ENA]
¢þ
>WENV180220334
OBAS01046314
[OBAS] human gut metagenome; human gut
373
448
+
Thr
CGT
[ENA]
¢þ
>WENV180302269
OBJF01001027
[OBJF] human gut metagenome; feces
6461
6536
+
Thr
CGT
[ENA]
¢þ
>WENV180479312
OBZC01001682
[OBZC] human gut metagenome; faeces
6063
5988
-
Thr
CGT
[ENA]
¢þ
>WENV180517733
OCHD01001575
[OCHD] human gut metagenome; human gut
1877
1802
-
Thr
CGT
[ENA]
¢þ
>WENV180610147
OCPV01128045
[OCPV] human gut metagenome; human gut
83
8
-
Thr
CGT
[ENA]
¢þ
>WENV180620480
OCQB01096206
[OCQB] human gut metagenome; human gut
125
50
-
Thr
CGT
[ENA]
¢þ
>WENV180836862
ODKG01000229
[ODKG] human metagenome; G_DNA_Stool
43657
43582
-
Thr
CGT
[ENA]
¢þ
>WENV180876501
ODLT01012713
[ODLT] human metagenome; G_DNA_Stool
2881
2806
-
Thr
CGT
[ENA]
¢þ
>WENV180956087
ODUK01000473
[ODUK] human metagenome; G_DNA_Stool
43423
43348
-
Thr
CGT
[ENA]
¢þ
>WENV180993565
ODVQ01004289
[ODVQ] human metagenome; G_DNA_Stool
881
806
-
Thr
CGT
[ENA]
¢þ
>WENV181418230
OGCM01002291
[OGCM] human gut metagenome; human gut
5339
5264
-
Thr
CGT
[ENA]
¢þ
>WENV181445803
OGDS01017413
[OGDS] metagenome; Human gut stool
7
82
+
Thr
CGT
[ENA]
¢þ
>WENV181460507
OGEL01017413
[OGEL] metagenome; Human gut stool
7
82
+
Thr
CGT
[ENA]
¢þ
>WENV181503617
OGGJ01005204
[OGGJ] metagenome; Human gut stool
4983
4908
-
Thr
CGT
[ENA]
¢þ
>WENV181517693
OGGZ01021444
[OGGZ] metagenome; Human gut stool
1155
1230
+
Thr
CGT
[ENA]
¢þ
>WENV181519458
OGHC01000197
[OGHC] metagenome; Human gut stool
42147
42072
-
Thr
CGT
[ENA]
¢þ
>WENV181533804
OGHS01000116
[OGHS] metagenome; Human gut stool
12816
12891
+
Thr
CGT
[ENA]
¢þ
>WENV181599945
OGLC01016089
[OGLC] metagenome; Human gut stool
406
481
+
Thr
CGT
[ENA]
¢þ
>WENV181613059
OGLT01001208
[OGLT] metagenome; Human gut stool
1817
1742
-
Thr
CGT
[ENA]
¢þ
>WENV181621211
OGMF01002912
[OGMF] metagenome; Human gut stool
12825
12900
+
Thr
CGT
[ENA]
¢þ
>WENV181668901
OGOL01005491
[OGOL] human gut metagenome; faeces
6151
6226
+
Thr
CGT
[ENA]
¢þ
>WENV181740014
OGQJ01002007
[OGQJ] human gut metagenome; faeces
15609
15684
+
Thr
CGT
[ENA]
¢þ
>WENV181758542
OGQU01001633
[OGQU] human gut metagenome; faeces
12496
12571
+
Thr
CGT
[ENA]
¢þ
>WENV181830121
OGUO01000531
[OGUO] human gut metagenome; faeces
12829
12904
+
Thr
CGT
[ENA]
¢þ
>WENV182006380
OHBF01000789
[OHBF] human gut metagenome; feces
12956
13031
+
Thr
CGT
[ENA]
¢þ
>WENV182055222
OHEL01002713
[OHEL] human gut metagenome; feces
4848
4773
-
Thr
CGT
[ENA]
¢þ
>WENV182058544
OHEP01018696
[OHEP] human gut metagenome; feces
395
470
+
Thr
CGT
[ENA]
¢þ
>WENV182082220
OHGK01041569
[OHGK] human gut metagenome; feces
57
132
+
Thr
CGT
[ENA]
¢þ
>WENV182096381
OHHN01000764
[OHHN] human gut metagenome; feces
5026
4951
-
Thr
CGT
[ENA]
¢þ
>WENV182130457
OHKB01000772
[OHKB] human gut metagenome; feces
4869
4794
-
Thr
CGT
[ENA]
¢þ
>WENV182149965
OHLH01028618
[OHLH] human gut metagenome; feces
839
764
-
Thr
CGT
[ENA]
¢þ
>WENV182151479
OHLJ01009341
[OHLJ] human gut metagenome; feces
1185
1260
+
Thr
CGT
[ENA]
¢þ
>WENV182193684
OHPB01014352
[OHPB] human gut metagenome; feces
876
801
-
Thr
CGT
[ENA]
¢þ
>WENV182213736
OHQH01017942
[OHQH] human gut metagenome; feces
368
443
+
Thr
CGT
[ENA]
¢þ
>WENV182220001
OHQR01025802
[OHQR] human gut metagenome; feces
275
350
+
Thr
CGT
[ENA]
¢þ
>WENV182241101
OHSF01002857
[OHSF] human gut metagenome; feces
808
733
-
Thr
CGT
[ENA]
¢þ
>WENV182251228
OHST01011762
[OHST] human gut metagenome; feces
328
403
+
Thr
CGT
[ENA]
¢þ
>WENV182416168
OIGD01000648
[OIGD] human gut metagenome; human gut
12416
12491
+
Thr
CGT
[ENA]
¢þ
>WENV182658102
OJMK01023504
[OJMK] human gut metagenome; feces
950
1025
+
Thr
CGT
[ENA]
¢þ
>WENV182693748
OJOH01004578
[OJOH] human gut metagenome; stool sample
3999
3924
-
Thr
CGT
[ENA]
¢þ
>WENV182712439
OJPF01000312
[OJPF] human gut metagenome; stool sample
5442
5367
-
Thr
CGT
[ENA]
¢þ
>WENV182727879
OJPW01000371
[OJPW] human gut metagenome; stool sample
4965
4890
-
Thr
CGT
[ENA]
¢þ
>WENV182735115
OJQF01042952
[OJQF] human gut metagenome; stool sample
217
142
-
Thr
CGT
[ENA]
¢þ
>WENV182736188
OJQH01000256
[OJQH] human gut metagenome; stool sample
25625
25700
+
Thr
CGT
[ENA]
¢þ
>WENV182754422
OJRD01013083
[OJRD] human gut metagenome; stool sample
1167
1092
-
Thr
CGT
[ENA]
¢þ
>WENV182759859
OJRK01000145
[OJRK] human gut metagenome; stool sample
9661
9586
-
Thr
CGT
[ENA]
¢þ
>WENV182766271
OJRT01003993
[OJRT] human gut metagenome; stool sample
2394
2469
+
Thr
CGT
[ENA]
¢þ
>WENV182897968
OKSP01023910
[OKSP] human gut metagenome; feces
325
400
+
Thr
CGT
[ENA]
¢þ
>WENV182909243
OKTH01002402
[OKTH] human gut metagenome; feces
5320
5245
-
Thr
CGT
[ENA]
¢þ
>WENV182968869
OKXB01006419
[OKXB] human gut metagenome; human gut
5201
5276
+
Thr
CGT
[ENA]
¢þ
>WENV182971553
OKXI01000467
[OKXI] human gut metagenome; human gut
15039
15114
+
Thr
CGT
[ENA]
¢þ
>WENV183041756
OLGD01001291
[OLGD] human gut metagenome; faeces
12613
12688
+
Thr
CGT
[ENA]
¢þ
>WENV183078441
OLIX01001749
[OLIX] human gut metagenome; feces
12717
12792
+
Thr
CGT
[ENA]
¢þ
>WENV183247334
OLRF01002803
[OLRF] human gut metagenome; faeces
12520
12595
+
Thr
CGT
[ENA]
¢þ
>WENV183302503
OLSP01031505
[OLSP] human gut metagenome; faeces
386
311
-
Thr
CGT
[ENA]
¢þ
>WENV183334673
OLWF01005362
[OLWF] human gut metagenome; feces
1115
1040
-
Thr
CGT
[ENA]
¢þ
>WENV183335455
OLWG01003527
[OLWG] human gut metagenome; feces
1907
1982
+
Thr
CGT
[ENA]
¢þ
>WENV183337187
OLWI01001486
[OLWI] human gut metagenome; feces
935
860
-
Thr
CGT
[ENA]
¢þ
>WENV183343019
OLWO01001336
[OLWO] human gut metagenome; feces
4879
4954
+
Thr
CGT
[ENA]
¢þ
>WENV183343823
OLWP01001137
[OLWP] human gut metagenome; feces
2503
2428
-
Thr
CGT
[ENA]
¢þ
>WENV183349040
OLWV01015538
[OLWV] human gut metagenome; feces
122
197
+
Thr
CGT
[ENA]
¢þ
>WENV183357394
OLXF01031882
[OLXF] human gut metagenome; feces
151
76
-
Thr
CGT
[ENA]
¢þ
>WENV183366996
OLXP01002884
[OLXP] human gut metagenome; feces
846
771
-
Thr
CGT
[ENA]
¢þ
>WENV183376822
OLYB01002226
[OLYB] human gut metagenome; feces
12382
12457
+
Thr
CGT
[ENA]
¢þ
>WENV183403940
OLZW01002308
[OLZW] human gut metagenome; feces
75
1
-
Thr
CGT
[ENA]
¢þ
>WENV183411679
OMAL01000994
[OMAL] human gut metagenome; feces
12624
12699
+
Thr
CGT
[ENA]
¢þ
>WENV183422269
OMBD01030977
[OMBD] human gut metagenome; feces
617
542
-
Thr
CGT
[ENA]
¢þ
>WENV183429580
OMBP01000019
[OMBP] human gut metagenome; feces
12698
12773
+
Thr
CGT
[ENA]
¢þ
>WENV183449520
OMCU01000956
[OMCU] human gut metagenome; feces
1361
1286
-
Thr
CGT
[ENA]
¢þ
>WENV183474903
OMEV01001026
[OMEV] human gut metagenome; feces
835
760
-
Thr
CGT
[ENA]
¢þ
>WENV183477760
OMFC01015248
[OMFC] human gut metagenome; feces
653
728
+
Thr
CGT
[ENA]
¢þ
>WENV183482738
OMFM01018413
[OMFM] human gut metagenome; feces
262
337
+
Thr
CGT
[ENA]
¢þ
>WENV183531398
OOAC01000957
[OOAC] human gut metagenome; human gut
13041
13116
+
Thr
CGT
[ENA]
¢þ
>WENV183540878
OOAK01000683
[OOAK] human gut metagenome; human gut
17630
17555
-
Thr
CGT
[ENA]
¢þ
>WENV183598304
OODG01000643
[OODG] human gut metagenome; human gut
12827
12902
+
Thr
CGT
[ENA]
¢þ
>WENV183604118
OODL01001219
[OODL] human gut metagenome; human gut
12753
12828
+
Thr
CGT
[ENA]
¢þ
>WENV183632715
OOIF01012231
[OOIF] human gut metagenome; human gut
1805
1880
+
Thr
CGT
[ENA]
¢þ
>WENV183768095
PPYE01384906
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4928
4853
-
Thr
CGT
[ENA]
¢þ
>WENV170101635
CEAR01039941
[CEAR] gut metagenome; human stools
12430
12505
+
Thr
CGT
[ENA]
¢þ
>WENV170108903
CECA01052052
[CECA] gut metagenome; human stools
12725
12800
+
Thr
CGT
[ENA]
¢þ
>WENV170111117
CECF01061208
[CECF] gut metagenome; human stools
5171
5096
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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