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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46904 (84 seq.)
>W1710822712
LKVH01000016
Betaproteobacteria
Ralstonia solanacearum [LKVH]
102740
102829
+
Ser
CGA
[ENA]
¡û
>W1711168279
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
458760
458849
+
Ser
CGA
[ENA]
¡û
>W1711340419
MCBM01000036
Betaproteobacteria
Ralstonia pseudosolanacearum CaRs-Mep [MCBM]
40199
40288
+
Ser
CGA
[ENA]
¡û
>W1711539046
MLYS01000001
Betaproteobacteria
Ralstonia solanacearum [MLYS]
2130312
2130223
-
Ser
CGA
[ENA]
¡û
>W1711539089
MLYT01000001
Betaproteobacteria
Ralstonia solanacearum [MLYT]
1960771
1960682
-
Ser
CGA
[ENA]
¡û
>W1711539129
MLYU01000001
Betaproteobacteria
Ralstonia solanacearum [MLYU]
2309754
2309665
-
Ser
CGA
[ENA]
¡û
>W1711573111
MNCM01000023
Betaproteobacteria
Ralstonia solanacearum [MNCM]
3573
3484
-
Ser
CGA
[ENA]
¡û
>W1711602820
MOLJ01000013
Betaproteobacteria
Ralstonia solanacearum [MOLJ]
15947
15858
-
Ser
CGA
[ENA]
¡û
>W1711602858
MOLK01000006
Betaproteobacteria
Ralstonia solanacearum [MOLK]
208230
208319
+
Ser
CGA
[ENA]
¡û
>W1711603055
MOLO01000003
Betaproteobacteria
Ralstonia solanacearum [MOLO]
208069
208158
+
Ser
CGA
[ENA]
¡û
>W1711603127
MOLP01000051
Betaproteobacteria
Ralstonia solanacearum [MOLP]
5630
5541
-
Ser
CGA
[ENA]
¡û
>W131006688
AHIX01000383
Betaproteobacteria
Ralstonia solanacearum FJAT-1458 [AHIX]
19790
19879
+
Ser
CGA
[ENA]
¡û
>W131006769
AHIY01001174
Betaproteobacteria
Ralstonia solanacearum FJAT-91 [AHIY]
1791
1702
-
Ser
CGA
[ENA]
¡û
>W131043702
AMPR01000166
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
8491
8580
+
Ser
CGA
[ENA]
¡û
>W131194448
ASQR01000051
Betaproteobacteria
Ralstonia solanacearum SD54 [ASQR]
55756
55667
-
Ser
CGA
[ENA]
¡û
>PL171001410
CP019912
Betaproteobacteria
blood disease bacterium A2-HR MARDI plasmid:unnamed
306455
306366
-
Ser
CGA
[ENA]
¡û
>C171002587
CP009764
Betaproteobacteria
Ralstonia solanacearum OE1-1 [CP009764]
2598662
2598573
-
Ser
CGA
-
¡û
>C171035680
CP015115
Betaproteobacteria
Ralstonia pseudosolanacearum EP1 [CP015115]
1261909
1261998
+
Ser
CGA
-
¡û
>C171050141
CP016554
Betaproteobacteria
Ralstonia solanacearum FJAT-1458 [CP016554]
1217459
1217548
+
Ser
CGA
-
¡û
>C171050219
CP016612
Betaproteobacteria
Ralstonia solanacearum FJAT-91 [CP016612]
2614124
2614035
-
Ser
CGA
-
¡û
>C171053159
CP016904
Betaproteobacteria
Ralstonia solanacearum KACC10709 [CP016904]
2067620
2067531
-
Ser
CGA
-
¡û
>C171119213
CP021448
Betaproteobacteria
Ralstonia solanacearum SEPPX05 [CP021448]
3682775
3682686
-
Ser
CGA
-
¡û
>C019191
AL646052
Betaproteobacteria
Ralstonia pseudosolanacearum GMI1000 [AL646052]
2534728
2534639
-
Ser
CGA
[Ensembl]
¡û
>WENV170965593
MTEU01004414
[MTEU] soil metagenome; naturally attenuated soil
35767
35678
-
Ser
CGA
[ENA]
¢þ
>WENV170966315
MTEX01006416
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
1185
1096
-
Ser
CGA
[ENA]
¢þ
>C181021962
CP016914
Betaproteobacteria
Ralstonia pseudosolanacearum CQPS-1 [CP016914]
2627334
2627423
+
Ser
CGA
-
¡û
>C181124807
CP025985
Betaproteobacteria
Ralstonia solanacearum RSCM [CP025985]
2758082
2757993
-
Ser
CGA
-
¡û
>C191019244
CP021762
Betaproteobacteria
Ralstonia pseudosolanacearum RS 476 [CP021762]
2534735
2534646
-
Ser
CGA
-
¡û
>C191020392
CP022481
Betaproteobacteria
Ralstonia solanacearum HA4-1 [CP022481]
706722
706811
+
Ser
CGA
-
¡û
>C191021291
CP022755
Betaproteobacteria
Ralstonia solanacearum T117 [CP022755]
2780028
2779939
-
Ser
CGA
-
¡û
>C191021319
CP022757
Betaproteobacteria
Ralstonia solanacearum T101 [CP022757]
1069792
1069881
+
Ser
CGA
-
¡û
>C191021372
CP022759
Betaproteobacteria
Ralstonia solanacearum T98 [CP022759]
1048194
1048283
+
Ser
CGA
-
¡û
>C191021424
CP022761
Betaproteobacteria
Ralstonia solanacearum T95 [CP022761]
1108098
1108187
+
Ser
CGA
-
¡û
>C191021477
CP022763
Betaproteobacteria
Ralstonia solanacearum T82 [CP022763]
1069847
1069936
+
Ser
CGA
-
¡û
>C191021530
CP022765
Betaproteobacteria
Ralstonia solanacearum T78 [CP022765]
1231933
1232022
+
Ser
CGA
-
¡û
>C191021583
CP022768
Betaproteobacteria
Ralstonia solanacearum T60 [CP022768]
1285964
1286053
+
Ser
CGA
-
¡û
>C191021636
CP022770
Betaproteobacteria
Ralstonia solanacearum T51 [CP022770]
1054048
1054137
+
Ser
CGA
-
¡û
>C191021689
CP022772
Betaproteobacteria
Ralstonia solanacearum T42 [CP022772]
1190747
1190836
+
Ser
CGA
-
¡û
>C191021742
CP022774
Betaproteobacteria
Ralstonia solanacearum T12 [CP022774]
1069750
1069839
+
Ser
CGA
-
¡û
>C191021795
CP022776
Betaproteobacteria
Ralstonia solanacearum T11 [CP022776]
1056923
1057012
+
Ser
CGA
-
¡û
>C191021848
CP022778
Betaproteobacteria
Ralstonia solanacearum SL3882 [CP022778]
1284801
1284890
+
Ser
CGA
-
¡û
>C191021901
CP022780
Betaproteobacteria
Ralstonia solanacearum SL3822 [CP022780]
1205774
1205863
+
Ser
CGA
-
¡û
>C191021954
CP022782
Betaproteobacteria
Ralstonia solanacearum SL3755 [CP022782]
1151635
1151724
+
Ser
CGA
-
¡û
>C191022007
CP022784
Betaproteobacteria
Ralstonia solanacearum SL3730 [CP022784]
1190679
1190768
+
Ser
CGA
-
¡û
>C191022086
CP022786
Betaproteobacteria
Ralstonia solanacearum SL3300 [CP022786]
3006669
3006580
-
Ser
CGA
-
¡û
>C191022113
CP022788
Betaproteobacteria
Ralstonia solanacearum SL3175 [CP022788]
1048199
1048288
+
Ser
CGA
-
¡û
>C191022165
CP022790
Betaproteobacteria
Ralstonia solanacearum SL3103 [CP022790]
1152687
1152776
+
Ser
CGA
-
¡û
>C191022218
CP022792
Betaproteobacteria
Ralstonia solanacearum SL2729 [CP022792]
1190776
1190865
+
Ser
CGA
-
¡û
>C191022271
CP022794
Betaproteobacteria
Ralstonia solanacearum SL2330 [CP022794]
1182486
1182575
+
Ser
CGA
-
¡û
>C191022324
CP022796
Betaproteobacteria
Ralstonia solanacearum SL2312 [CP022796]
1069848
1069937
+
Ser
CGA
-
¡û
>C191022375
CP022798
Betaproteobacteria
Ralstonia solanacearum SL2064 [CP022798]
1108097
1108186
+
Ser
CGA
-
¡û
>C191023362
CP023012
Betaproteobacteria
Ralstonia solanacearum T110 [CP023012]
1154215
1154304
+
Ser
CGA
-
¡û
>C191023411
CP023014
Betaproteobacteria
Ralstonia solanacearum T25 [CP023014]
1156671
1156760
+
Ser
CGA
-
¡û
>C191023463
CP023016
Betaproteobacteria
Ralstonia solanacearum SL3022 [CP023016]
1132461
1132550
+
Ser
CGA
-
¡û
>W141526036
JHAM01000069
Betaproteobacteria
Ralstonia solanacearum Rs-10-244 [JHAM]
11576
11487
-
Ser
CGA
[ENA]
¡û
>W141526132
JHBO01000069
Betaproteobacteria
Ralstonia solanacearum Rs-09-161 [JHBO]
13225
13136
-
Ser
CGA
[ENA]
¡û
>C191117114
CP033969
Betaproteobacteria
Cupriavidus pauculus FDAARGOS_614 [CP033969, CP033970]
95360
95271
-
Ser
CGA
-
¡û
>C191165147
CP039339
Betaproteobacteria
Ralstonia pseudosolanacearum UW386 [CP039339]
1507651
1507740
+
Ser
CGA
-
¡û
>W1810177512
PJRP01000001
Betaproteobacteria
Cupriavidus pauculus UM1 [PJRP]
980298
980387
+
Ser
CGA
[ENA]
¡û
>W1810235262
PPFC01000018
Betaproteobacteria
Ralstonia solanacearum UTT-25 [PPFC]
13252
13163
-
Ser
CGA
[ENA]
¡û
>W1810596736
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
434933
435022
+
Ser
CGA
[ENA]
¡û
>W1810684597
QKYQ01000002
Betaproteobacteria
Ralstonia pseudosolanacearum Fm03 [QKYQ]
195388
195477
+
Ser
CGA
[ENA]
¡û
>W1810684685
QKYR01000023
Betaproteobacteria
Ralstonia pseudosolanacearum Bg07 [QKYR]
77317
77406
+
Ser
CGA
[ENA]
¡û
>W1810684729
QKYS01000015
Betaproteobacteria
Ralstonia pseudosolanacearum Cq01 [QKYS]
10164
10075
-
Ser
CGA
[ENA]
¡û
>W1810861204
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1668379
1668290
-
Ser
CGA
[ENA]
¡û
>C151069984
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
760937
761026
+
Ser
CGA
-
¡û
>W1510015085
BBQN01000051
Betaproteobacteria
Cupriavidus pauculus KF709 [BBQN]
8866
8955
+
Ser
CGA
[ENA]
¡û
>W11175677
AFWL01000178
Betaproteobacteria
Ralstonia solanacearum Y45 [AFWL]
20588
20677
+
Ser
CGA
[ENA]
¡û
>C121016477
FP885906
Betaproteobacteria
Ralstonia solanacearum PSI07 [FP885906]
1150574
1150663
+
Ser
CGA
[Ensembl]
¡û
>C161076341
CP014702
Betaproteobacteria
Ralstonia solanacearum KACC 10722 [CP014702]
1100538
1100627
+
Ser
CGA
[Ensembl]
¡û
>C161091624
CP015850
Betaproteobacteria
Ralstonia solanacearum YC40-M [CP015850]
1236897
1236986
+
Ser
CGA
-
¡û
>W1610053739
BBQI01000093
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
99712
99623
-
Ser
CGA
[ENA]
¡û
>C131011459
CP004012
Betaproteobacteria
Ralstonia pseudosolanacearum FQY_4 [CP004012]
2467999
2467910
-
Ser
CGA
[Ensembl]
¡û
>C131018272
FP885895
Betaproteobacteria
Ralstonia solanacearum CMR15 [FP885895]
1102293
1102382
+
Ser
CGA
[Ensembl]
¡û
>W1610548704
JXBA01000066
Betaproteobacteria
Ralstonia solanacearum [JXBA]
14422
14511
+
Ser
CGA
[ENA]
¡û
>W1610550365
JXLK01000096
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [JXLK]
8131
8042
-
Ser
CGA
[ENA]
¡û
>W1610599150
LFJP01000036
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [LFJP]
1662
1573
-
Ser
CGA
[ENA]
¡û
>W1610686577
LKVH01000016
Betaproteobacteria
Ralstonia solanacearum [LKVH]
102740
102829
+
Ser
CGA
[ENA]
¡û
>W1610978194
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
458760
458849
+
Ser
CGA
[ENA]
¡û
>W1710050117
BBQI01000093
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
99712
99623
-
Ser
CGA
[ENA]
¡û
>W1710525461
FNJO01000002
Betaproteobacteria
Ralstonia sp. 25mfcol4.1 [FNJO]
259646
259557
-
Ser
CGA
[ENA]
¡û
>W1710652320
JXBA01000066
Betaproteobacteria
Ralstonia solanacearum [JXBA]
14422
14511
+
Ser
CGA
[ENA]
¡û
>W1710659999
JXLK01000096
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [JXLK]
8131
8042
-
Ser
CGA
[ENA]
¡û
>W1710720508
LFJP01000036
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [LFJP]
1662
1573
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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