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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46905 (71 seq.)
>W1711712322
MTBV01000071
Gammaproteobacteria
Actinobacillus suis [MTBV]
187
98
-
Ser
GGA
[ENA]
¡û
>W1711712358
MTBW01000021
Gammaproteobacteria
Actinobacillus suis [MTBW]
10102
10013
-
Ser
GGA
[ENA]
¡û
>W1711712434
MTBX01000088
Gammaproteobacteria
Actinobacillus suis [MTBX]
9952
9863
-
Ser
GGA
[ENA]
¡û
>W1711766020
MUYA01000004
Gammaproteobacteria
Haemophilus paracuniculus [MUYA]
144049
143960
-
Ser
GGA
[ENA]
¡û
>W131170456
ARFN01000038
Gammaproteobacteria
Actinobacillus capsulatus DSM 19761 [ARFN]
45117
45028
-
Ser
GGA
[ENA]
¡û
>C000923
CP000569
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 5b str. L20 [CP000569]
253764
253853
+
Ser
GGA
[Ensembl]
¡û
>WENV180011441
FLSK01003053
[FLSK] metagenome; saliva
1637
1548
-
Ser
GGA
[ENA]
¢þ
>W141039913
ALYN01000038
Gammaproteobacteria
Actinobacillus pleuropneumoniae S8 [ALYN]
17031
17120
+
Ser
GGA
[ENA]
¡û
>WENV180722536
ODGM01001888
[ODGM] human metagenome; G_DNA_Palatine Tonsils
3896
3985
+
Ser
GGA
[ENA]
¢þ
>WENV180986284
ODVJ01090502
[ODVJ] human metagenome; G_DNA_Tongue dorsum
202
291
+
Ser
GGA
[ENA]
¢þ
>WENV181084709
OEAX01000024
[OEAX] human metagenome; G_DNA_Tongue dorsum
124967
125056
+
Ser
GGA
[ENA]
¢þ
>WENV181567213
OGJJ01002390
[OGJJ] metagenome; Human gut stool
11522
11611
+
Ser
GGA
[ENA]
¢þ
>C08000869
CP000687
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 3 str. JL03 [CP000687]
256948
257037
+
Ser
GGA
[Ensembl]
¡û
>W141285250
JANJ01000001
Gammaproteobacteria
Mannheimia granulomatis serotype A1/A6 str. PKL10 [JANJ]
127955
127866
-
Ser
GGA
[ENA]
¡û
>C08000807
CP001091
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 7 str. AP76 [CP001091]
261456
261545
+
Ser
GGA
[Ensembl]
¡û
>WENV183709050
PDWI01023320
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3160
3249
+
Ser
GGA
[ENA]
¢þ
>C181171429
CP029003
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [CP029003]
258868
258957
+
Ser
GGA
-
¡û
>C181192260
CP030753
Gammaproteobacteria
Actinobacillus pleuropneumoniae S4074 [CP030753]
258880
258969
+
Ser
GGA
-
¡û
>C181208360
LS483358
Gammaproteobacteria
Actinobacillus pleuropneumoniae NCTC11384 [LS483358]
257246
257335
+
Ser
GGA
-
¡û
>C181225345
LT906456
Gammaproteobacteria
Actinobacillus suis NCTC12996 [LT906456]
1258728
1258639
-
Ser
GGA
-
¡û
>C191021039
CP022715
Gammaproteobacteria
Actinobacillus pleuropneumoniae KL 16 [CP022715]
1417575
1417664
+
Ser
GGA
-
¡û
>C191198784
LR134169
Gammaproteobacteria
Actinobacillus lignieresii NCTC10568 [LR134169]
1302079
1301990
-
Ser
GGA
-
¡û
>C191205734
LR134310
Gammaproteobacteria
Actinobacillus equuli NCTC8529 [LR134310]
449496
449407
-
Ser
GGA
-
¡û
>C191212146
LR134486
Gammaproteobacteria
Actinobacillus equuli NCTC9435 [LR134486]
1139091
1139002
-
Ser
GGA
-
¡û
>C191213563
LR134515
Gammaproteobacteria
Actinobacillus pleuropneumoniae NCTC10976 [LR134515]
256804
256893
+
Ser
GGA
-
¡û
>W141562372
JHZD01000002
Gammaproteobacteria
Mannheimia granulomatis DSM 19156 [JHZD]
346774
346863
+
Ser
GGA
[ENA]
¡û
>W1910004575
AVSP01000004
Gammaproteobacteria
Mannheimia granulomatis MH-PKL1 [AVSP]
200303
200214
-
Ser
GGA
[ENA]
¡û
>W1810531518
QCXP01000002
Gammaproteobacteria
Actinobacillus suis AS108/13 [QCXP]
48647
48558
-
Ser
GGA
[ENA]
¡û
>W1810578200
QEPN01000001
Gammaproteobacteria
Haemophilus sputorum C2002001239 [QEPN]
400716
400805
+
Ser
GGA
[ENA]
¡û
>W1810579178
QEQG01000001
Gammaproteobacteria
Haemophilus sputorum C2015005473 [QEQG]
365571
365660
+
Ser
GGA
[ENA]
¡û
>W1810579228
QEQH01000001
Gammaproteobacteria
Haemophilus sputorum C2015005679 [QEQH]
365571
365660
+
Ser
GGA
[ENA]
¡û
>C151015320
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
711974
712063
+
Ser
GGA
[Ensembl]
¡û
>C151015377
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
790626
790715
+
Ser
GGA
[Ensembl]
¡û
>C151015469
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
1685656
1685567
-
Ser
GGA
[Ensembl]
¡û
>C151032807
CP007715
Gammaproteobacteria
Actinobacillus equuli subsp. equuli 19392 [CP007715]
1259784
1259695
-
Ser
GGA
[Ensembl]
¡û
>C151045012
CP009159
Gammaproteobacteria
Actinobacillus suis ATCC 33415 [CP009159]
1258581
1258492
-
Ser
GGA
[Ensembl]
¡û
>W10116665
ADOE01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
24074
24163
+
Ser
GGA
[ENA]
¡û
>W10116707
ADOF01000009
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
17034
17123
+
Ser
GGA
[ENA]
¡û
>W10116744
ADOG01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
24190
24279
+
Ser
GGA
[ENA]
¡û
>W10116790
ADOI01000007
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
5835
5924
+
Ser
GGA
[ENA]
¡û
>W10116836
ADOJ01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 10 str. D13039 [ADOJ]
5970
6059
+
Ser
GGA
[ENA]
¡û
>W10116882
ADOK01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
5898
5987
+
Ser
GGA
[ENA]
¡û
>W10116926
ADOL01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 12 str. 1096 [ADOL]
17124
17213
+
Ser
GGA
[ENA]
¡û
>W10116970
ADOM01000007
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 13 str. N273 [ADOM]
17060
17149
+
Ser
GGA
[ENA]
¡û
>W10120627
ADXN01000012
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
27061
26972
-
Ser
GGA
[ENA]
¡û
>W10120722
ADXO01000036
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
25501
25412
-
Ser
GGA
[ENA]
¡û
>W1511387863
JSVF01000003
Gammaproteobacteria
Actinobacillus pleuropneumoniae 1022 [JSVF]
24539
24628
+
Ser
GGA
[ENA]
¡û
>W1511387909
JSVG01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae 460 [JSVG]
24663
24752
+
Ser
GGA
[ENA]
¡û
>W1511388138
JSVV01000004
Gammaproteobacteria
Actinobacillus pleuropneumoniae 780 [JSVV]
24711
24800
+
Ser
GGA
[ENA]
¡û
>W1511388183
JSVX01000004
Gammaproteobacteria
Actinobacillus pleuropneumoniae 597 [JSVX]
24548
24637
+
Ser
GGA
[ENA]
¡û
>W1511388229
JSVY01000003
Gammaproteobacteria
Actinobacillus pleuropneumoniae 5651 [JSVY]
24662
24751
+
Ser
GGA
[ENA]
¡û
>W1511388277
JSVZ01000003
Gammaproteobacteria
Actinobacillus pleuropneumoniae 518 [JSVZ]
24539
24628
+
Ser
GGA
[ENA]
¡û
>W11121471
ADOD01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [ADOD]
5835
5924
+
Ser
GGA
[ENA]
¡û
>W11121518
ADOE01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
24074
24163
+
Ser
GGA
[ENA]
¡û
>W11121560
ADOF01000009
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
17034
17123
+
Ser
GGA
[ENA]
¡û
>W11121597
ADOG01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
24190
24279
+
Ser
GGA
[ENA]
¡û
>W11121643
ADOI01000007
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
5835
5924
+
Ser
GGA
[ENA]
¡û
>W11121689
ADOJ01000005
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 10 str. D13039 [ADOJ]
5970
6059
+
Ser
GGA
[ENA]
¡û
>W11121735
ADOK01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
5898
5987
+
Ser
GGA
[ENA]
¡û
>W11121779
ADOL01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 12 str. 1096 [ADOL]
17124
17213
+
Ser
GGA
[ENA]
¡û
>W11121823
ADOM01000007
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 13 str. N273 [ADOM]
17060
17149
+
Ser
GGA
[ENA]
¡û
>W11127371
ADXN01000012
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
27061
26972
-
Ser
GGA
[ENA]
¡û
>W11127466
ADXO01000036
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
25501
25412
-
Ser
GGA
[ENA]
¡û
>W11150087
AEVG01000115
Gammaproteobacteria
Actinobacillus ureae ATCC 25976 [AEVG]
460
371
-
Ser
GGA
[ENA]
¡û
>W11167736
AFNK01000053
Gammaproteobacteria
Haemophilus sputorum CCUG 13788 [AFNK]
212022
212111
+
Ser
GGA
[ENA]
¡û
>C161108119
LN908249
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 8 [LN908249]
256654
256743
+
Ser
GGA
[Ensembl]
¡û
>W121111622
ALJP01000009
Gammaproteobacteria
Haemophilus sputorum HK 2154 [ALJP]
517761
517672
-
Ser
GGA
[ENA]
¡û
>C131006045
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
1662383
1662294
-
Ser
GGA
[Ensembl]
¡û
>C131008825
CP003875
Gammaproteobacteria
Actinobacillus suis H91-0380 [CP003875]
1241737
1241648
-
Ser
GGA
[Ensembl]
¡û
>W1610516323
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
1028771
1028860
+
Ser
GGA
[ENA]
¡û
>W1710611665
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
1028771
1028860
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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