This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.469211 (33 seq.)
>W1710856800
LLZQ01000011
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
95469
95395
-
Glu
TTC
[ENA]
¡û
>W1710856801
LLZQ01000011
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
95381
95307
-
Glu
TTC
[ENA]
¡û
>W1710856802
LLZQ01000011
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
95293
95219
-
Glu
CTC
[ENA]
¡û
>W1710864852
LMGF01000001
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
18382
18456
+
Glu
CTC
[ENA]
¡û
>W1710866208
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1072130
1072204
+
Glu
CTC
[ENA]
¡û
>W1711083853
LSVG01000016
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
45395
45469
+
Glu
CTC
[ENA]
¡û
>W1711284895
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
140227
140153
-
Glu
CTC
[ENA]
¡û
>W1711501957
MKSE01000021
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
568
494
-
Glu
TTC
[ENA]
¡û
>W1712105766
NISJ01000002
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
301721
301795
+
Glu
CTC
[ENA]
¡û
>C171056562
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1174992
1175066
+
Glu
CTC
-
¡û
>WENV182544882
OJBK01003896
[OJBK] seawater metagenome; Sea water
39
113
+
Glu
CTC
[ENA]
¢þ
>WENV182563806
OJED01000152
[OJED] seawater metagenome; Sea water
16338
16412
+
Glu
CTC
[ENA]
¢þ
>WENV183729906
PJTR01000170
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
523
449
-
Glu
CTC
[ENA]
¢þ
>WENV183734355
PJTZ01003077
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
270
344
+
Glu
CTC
[ENA]
¢þ
>WENV183737037
PJUD01000281
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
18020
17946
-
Glu
CTC
[ENA]
¢þ
>WENV183740959
PJUF01021961
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
299
225
-
Glu
TTC
[ENA]
¢þ
>C181047586
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
3553482
3553556
+
Glu
CTC
-
¡û
>C181072113
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2487037
2486963
-
Glu
CTC
-
¡û
>C191103910
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
815556
815482
-
Glu
CTC
-
¡û
>W1910007013
BBQY01000016
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
77058
77132
+
Glu
CTC
[ENA]
¡û
>W1911688283
QLJK01000005
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
148726
148652
-
Glu
CTC
[ENA]
¡û
>W1810120393
PHSO01000004
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
154675
154601
-
Glu
TTC
[ENA]
¡û
>W1810120394
PHSO01000004
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
154572
154498
-
Glu
TTC
[ENA]
¡û
>W1810787260
QRDP01000004
Alphaproteobacteria
Parasphingopyxis lamellibrachiae DSM 26725 [QRDP]
804690
804764
+
Glu
CTC
[ENA]
¡û
>W1511398342
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1123029
1123103
+
Glu
CTC
[ENA]
¡û
>C161003380
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
1811671
1811597
-
Glu
CTC
[Ensembl]
¡û
>W1610071212
BCTW01000027
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
9494
9420
-
Glu
CTC
[ENA]
¡û
>W1610719183
LLZQ01000011
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
95293
95219
-
Glu
CTC
[ENA]
¡û
>W1610727198
LMGF01000001
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
18382
18456
+
Glu
CTC
[ENA]
¡û
>W1610728554
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1072130
1072204
+
Glu
CTC
[ENA]
¡û
>W1610922606
LSVG01000016
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
45395
45469
+
Glu
CTC
[ENA]
¡û
>W1611042680
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
140227
140153
-
Glu
CTC
[ENA]
¡û
>W1710068577
BCTW01000027
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
9494
9420
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK