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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470060 (44 seq.)
>W1710882350
LMTS01000298
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
13169
13244
+
Thr
TGT
[ENA]
¡û
>W1711504034
MKUE01000024
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
14367
14442
+
Thr
TGT
[ENA]
¡û
>W1711504112
MKUG01000063
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
39227
39152
-
Thr
TGT
[ENA]
¡û
>C171049738
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
3439500
3439575
+
Thr
TGT
-
¡û
>W131163058
AQZM01000002
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
1236750
1236825
+
Thr
TGT
[ENA]
¡û
>W131168069
ARDU01000001
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
47153
47078
-
Thr
TGT
[ENA]
¡û
>W131170321
ARFL01000002
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
806961
807036
+
Thr
TGT
[ENA]
¡û
>W131186112
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
2995655
2995580
-
Thr
TGT
[ENA]
¡û
>C017285
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
759510
759585
+
Thr
TGT
[Ensembl]
¡û
>C017328
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
847808
847883
+
Thr
TGT
[Ensembl]
¡û
>WENV181167854
OEIU01090922
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
534
459
-
Thr
TGT
[ENA]
¢þ
>WENV181190649
OEPS010000693
[OEPS] soil metagenome; soil
1185
1260
+
Thr
TGT
[ENA]
¢þ
>WENV181223403
OFDC01011681
[OFDC] hot springs metagenome; Water
1415
1340
-
Thr
TGT
[ENA]
¢þ
>WENV181227274
OFDN01004828
[OFDN] hot springs metagenome; Water
663
738
+
Thr
TGT
[ENA]
¢þ
>C08007642
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
847808
847883
+
Thr
TGT
[Ensembl]
¡û
>W141216061
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
85473
85548
+
Thr
TGT
[ENA]
¡û
>W141266006
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
1252671
1252596
-
Thr
TGT
[ENA]
¡û
>WENV183726446
PJQF01203119
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
148
223
+
Thr
TGT
[ENA]
¢þ
>WENV170639847
JFJP01009935
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3957
4032
+
Thr
TGT
[ENA]
¢þ
>WENV170707065
LNAP01012098
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
277
352
+
Thr
TGT
[ENA]
¢þ
>W09101604
AAFQ02000002
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
204505
204430
-
Thr
TGT
[ENA]
¡û
>W09104849
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
60641
60716
+
Thr
TGT
[ENA]
¡û
>C191073168
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
2208054
2208129
+
Thr
TGT
-
¡û
>W141558080
JHVQ01000005
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
184411
184336
-
Thr
TGT
[ENA]
¡û
>W141565120
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3250839
3250764
-
Thr
TGT
[ENA]
¡û
>W141695478
JMDZ01000008
Betaproteobacteria
Polaromonas glacialis [JMDZ]
123171
123096
-
Thr
TGT
[ENA]
¡û
>W1910699873
MERZ01000084
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
8341
8416
+
Thr
TGT
[ENA]
¡û
>W1810046255
NNBQ01000013
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
252867
252792
-
Thr
TGT
[ENA]
¡û
>W1810046352
NNBR01000016
Betaproteobacteria
Variovorax sp. B2 [NNBR]
1235280
1235355
+
Thr
TGT
[ENA]
¡û
>W1810392032
PXZZ01000006
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
53389
53314
-
Thr
TGT
[ENA]
¡û
>W1810594319
QFZK01000002
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
157865
157940
+
Thr
TGT
[ENA]
¡û
>W121084915
AKIV01000060
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
86264
86189
-
Thr
TGT
[ENA]
¡û
>W1610047762
BBDP01001065
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
212
287
+
Thr
TGT
[ENA]
¡û
>W1610076203
BCYO01000006
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
160511
160436
-
Thr
TGT
[ENA]
¡û
>W1610593880
LDUG01000024
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
27735
27810
+
Thr
TGT
[ENA]
¡û
>W1610744276
LMTS01000298
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
13169
13244
+
Thr
TGT
[ENA]
¡û
>W1710044272
BBDP01001065
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
212
287
+
Thr
TGT
[ENA]
¡û
>W1710074018
BCYO01000006
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
160511
160436
-
Thr
TGT
[ENA]
¡û
>W1710512939
FMZU01000007
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
87838
87913
+
Thr
TGT
[ENA]
¡û
>W1710523405
FNHX01000005
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
179894
179969
+
Thr
TGT
[ENA]
¡û
>W1710534037
FNRO01000004
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
428049
427974
-
Thr
TGT
[ENA]
¡û
>W1710557386
FOKZ01000001
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
115485
115560
+
Thr
TGT
[ENA]
¡û
>W1710578306
FPBM01000003
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
334510
334435
-
Thr
TGT
[ENA]
¡û
>W1710713355
LDUG01000024
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
27735
27810
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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