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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47029 (10 seq.)
>WENV181228640
OFEH01000626
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
8714
8629
-
Leu
TAG
[ENA]
¢þ
>WENV181406881
OGCG01002196
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1512
1597
+
Leu
TAG
[ENA]
¢þ
>C08005606
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
134966
134881
-
Leu
TAG
[Ensembl]
¡û
>W09107123
ABFI01000004
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
30940
31025
+
Leu
TAG
[ENA]
¡û
>C151003675
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
138431
138346
-
Leu
TAG
[Ensembl]
¡û
>C151003719
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
138467
138382
-
Leu
TAG
[Ensembl]
¡û
>W10115187
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
175567
175482
-
Leu
TAG
[ENA]
¡û
>W11118773
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
175567
175482
-
Leu
TAG
[ENA]
¡û
>C131013414
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
138466
138381
-
Leu
TAG
[Ensembl]
¡û
>C131013726
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
138428
138343
-
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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