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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47031 (74 seq.)
>A171004812
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1069762
1069675
-
Ser
TGA
-
¡û
>A171004865
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1040865
1040780
-
Ser
TGA
-
¡û
>A171004917
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
1162006
1161919
-
Ser
TGA
-
¡û
>A171004957
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2977689
2977603
-
Ser
TGA
-
¡û
>A171004992
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2447982
2448068
+
Ser
TGA
-
¡û
>A171005044
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2571222
2571308
+
Ser
TGA
-
¡û
>A171005094
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2599799
2599885
+
Ser
TGA
-
¡û
>A171005175
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1301922
1301836
-
Ser
TGA
-
¡û
>A171005271
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
3231725
3231640
-
Ser
TGA
-
¡û
>A171005295
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
601925
602011
+
Ser
TGA
-
¡û
>WENV180345700
OBLN01002885
[OBLN] sediment metagenome; sediment
2479
2565
+
Ser
TGA
[ENA]
¢þ
>At1419
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
3510748
3510664
-
Ser
TGA
[Ensembl]
¡û
>At1549
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
3174177
3174093
-
Ser
TGA
[Ensembl]
¡û
>WENV170718722
LSQX01088206
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5563
5649
+
Ser
TGA
[ENA]
¢þ
>W1910569263
JJOR01000151
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910569290
JJOS01000033
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
5735
5821
+
Ser
TGA
[ENA]
¡û
>W1910569365
JJOT01000095
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910569420
JJOU01000186
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
6661
6747
+
Ser
TGA
[ENA]
¡û
>W1910569688
JJPA01000035
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
6930
7016
+
Ser
TGA
[ENA]
¡û
>W1910569762
JJPB01000089
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910569801
JJPC01000035
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
12734
12648
-
Ser
TGA
[ENA]
¡û
>W1910569879
JJPD01000181
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
5673
5759
+
Ser
TGA
[ENA]
¡û
>W1910569918
JJPE01000113
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910569978
JJPF01000108
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
61736
61822
+
Ser
TGA
[ENA]
¡û
>W1910569997
JJPG01000012
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570088
JJPH01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910570138
JJPI01000141
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
210943
210857
-
Ser
TGA
[ENA]
¡û
>W1910570191
JJPJ01000148
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570229
JJPK01000103
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570273
JJPL01000113
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570328
JJPM01000202
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
776
862
+
Ser
TGA
[ENA]
¡û
>W1910570381
JJPN01000135
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
5670
5756
+
Ser
TGA
[ENA]
¡û
>W1910570438
JJPO01000144
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570454
JJPP01000029
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
12321
12235
-
Ser
TGA
[ENA]
¡û
>W1910570535
JJPQ01000120
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
5812
5898
+
Ser
TGA
[ENA]
¡û
>W1910570565
JJPR01000069
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570643
JJPS01000212
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570690
JJPT01000157
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570701
JJPU01000023
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570774
JJPV01000051
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
135823
135737
-
Ser
TGA
[ENA]
¡û
>W1910570821
JJPW01000039
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570868
JJPX01000069
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910570915
JJPY01000051
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
5715
5801
+
Ser
TGA
[ENA]
¡û
>W1910570985
JJPZ01000128
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
5737
5823
+
Ser
TGA
[ENA]
¡û
>W1910571015
JJQA01000044
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910571077
JJQB01000087
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910571125
JJQC01000074
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910571182
JJQD01000147
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
5682
5768
+
Ser
TGA
[ENA]
¡û
>W1910571236
JJQE01000141
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
5682
5768
+
Ser
TGA
[ENA]
¡û
>W1910571278
JJQF01000070
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910571309
JJQG01000047
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
5654
5740
+
Ser
TGA
[ENA]
¡û
>W1910571360
JJQH01000045
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910571425
JJQI01000049
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
5660
5746
+
Ser
TGA
[ENA]
¡û
>W1910571476
JJQJ01000108
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910571524
JJQK01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
12752
12666
-
Ser
TGA
[ENA]
¡û
>W1910571639
JJQM01000079
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910571691
JJQN01000047
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910571795
JJQO01000352
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910571810
JJQP01000104
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
12384
12298
-
Ser
TGA
[ENA]
¡û
>W1910571882
JJQQ01000139
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
363
277
-
Ser
TGA
[ENA]
¡û
>W1910571917
JJQR01000038
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910571954
JJQS01000019
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
5689
5775
+
Ser
TGA
[ENA]
¡û
>W1910572031
JJQT01000155
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910572074
JJQU01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
5662
5748
+
Ser
TGA
[ENA]
¡û
>W1910572123
JJQV01000052
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910572160
JJQW01000026
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
74325
74411
+
Ser
TGA
[ENA]
¡û
>W1910572208
JJQX01000024
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910572322
JJQZ01000103
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910572370
JJRA01000065
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
6294
6380
+
Ser
TGA
[ENA]
¡û
>W1910572403
JJRB01000034
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
5661
5747
+
Ser
TGA
[ENA]
¡û
>W1910575067
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2495484
2495398
-
Ser
TGA
[ENA]
¡û
>W1910635232
LMVP01000003
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
11566
11652
+
Ser
TGA
[ENA]
¡û
>W1610045128
BBBC01000212
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
2949
3035
+
Ser
TGA
[ENA]
¡û
>W1610046910
BBCW01000045
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
11931
11844
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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