This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470368 (65 seq.)
>WENV180316809
OBKJ01000045
[OBKJ] metagenome; hydrothermal vent
17994
17919
-
Phe
GAA
[ENA]
¢þ
>WENV181206146
OFAT01000028
[OFAT] metagenome; hydrothermal vent
2453
2528
+
Phe
GAA
[ENA]
¢þ
>WENV181206529
OFAW01000030
[OFAW] metagenome; hydrothermal vent
2329
2404
+
Phe
GAA
[ENA]
¢þ
>WENV181207011
OFAY01000030
[OFAY] metagenome; hydrothermal vent
2313
2388
+
Phe
GAA
[ENA]
¢þ
>WENV181207385
OFAZ01000030
[OFAZ] metagenome; hydrothermal vent
2310
2385
+
Phe
GAA
[ENA]
¢þ
>WENV181207749
OFBA01000028
[OFBA] metagenome; hydrothermal vent
29075
29000
-
Phe
GAA
[ENA]
¢þ
>WENV181208126
OFBB01000031
[OFBB] metagenome; hydrothermal vent
2492
2567
+
Phe
GAA
[ENA]
¢þ
>WENV181208549
OFBC01000031
[OFBC] metagenome; hydrothermal vent
2326
2401
+
Phe
GAA
[ENA]
¢þ
>WENV181223722
OFDD01000026
[OFDD] metagenome; hydrothermal vent
2405
2480
+
Phe
GAA
[ENA]
¢þ
>WENV181224113
OFDE01000028
[OFDE] metagenome; hydrothermal vent
2355
2430
+
Phe
GAA
[ENA]
¢þ
>WENV181224345
OFDF01000026
[OFDF] metagenome; hydrothermal vent
2853
2928
+
Phe
GAA
[ENA]
¢þ
>WENV181224581
OFDG01000028
[OFDG] metagenome; hydrothermal vent
2390
2465
+
Phe
GAA
[ENA]
¢þ
>WENV181225289
OFDI01000031
[OFDI] metagenome; hydrothermal vent
29075
29000
-
Phe
GAA
[ENA]
¢þ
>WENV183710991
PDWI01058138
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
224
149
-
Phe
GAA
[ENA]
¢þ
>WENV183719435
PDWJ01014112
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8028
8103
+
Phe
GAA
[ENA]
¢þ
>WENV170112442
CEGE01016856
[CEGE] microbial mat metagenome; grass silage
334
259
-
Phe
GAA
[ENA]
¢þ
>WENV170635267
JDSF01000556
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
2581
2656
+
Phe
GAA
[ENA]
¢þ
>WENV170646377
JQGR01000371
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
831
756
-
Phe
GAA
[ENA]
¢þ
>C181196927
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
363049
363124
+
Phe
GAA
-
¡û
>C181196984
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2276494
2276419
-
Phe
GAA
-
¡û
>C181197012
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1077881
1077806
-
Phe
GAA
-
¡û
>C181197049
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2334207
2334132
-
Phe
GAA
-
¡û
>C181197075
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1150571
1150496
-
Phe
GAA
-
¡û
>C191084493
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2311492
2311417
-
Phe
GAA
-
¡û
>C191084509
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1037909
1037834
-
Phe
GAA
-
¡û
>C191084677
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1065057
1064982
-
Phe
GAA
-
¡û
>C191186407
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2492262
2492187
-
Phe
GAA
-
¡û
>W1911413049
NWVW01000005
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39672
39597
-
Phe
GAA
[ENA]
¡û
>W1911413051
NWVW01000006
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
18494
18569
+
Phe
GAA
[ENA]
¡û
>W1911413096
NWVX01000007
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
77644
77719
+
Phe
GAA
[ENA]
¡û
>W1911419385
NXAO01000047
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
37047
37122
+
Phe
GAA
[ENA]
¡û
>W1911424160
NXFY01000001
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
60139
60064
-
Phe
GAA
[ENA]
¡û
>W1911424188
NXFY01000025
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
19243
19168
-
Phe
GAA
[ENA]
¡û
>W1911426169
NXID01000003
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
117465
117540
+
Phe
GAA
[ENA]
¡û
>W1911426177
NXID01000009
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
36252
36177
-
Phe
GAA
[ENA]
¡û
>W1911426241
NXIE01000005
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16093
16168
+
Phe
GAA
[ENA]
¡û
>W1911426273
NXIF01000031
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
18417
18492
+
Phe
GAA
[ENA]
¡û
>W1911426292
NXIF01000039
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
27498
27573
+
Phe
GAA
[ENA]
¡û
>W1911576214
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
114454
114379
-
Phe
GAA
[ENA]
¡û
>W1911576216
PDJV01000012
Campylobacterota
Arcobacter sp. F2176 [PDJV]
17017
17092
+
Phe
GAA
[ENA]
¡û
>W1911576245
PDJW01000016
Campylobacterota
Malaciobacter mytili T234 [PDJW]
31147
31072
-
Phe
GAA
[ENA]
¡û
>W1911576275
PDJW01000097
Campylobacterota
Malaciobacter mytili T234 [PDJW]
1904
1829
-
Phe
GAA
[ENA]
¡û
>W1911576279
PDJX01000002
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
210374
210449
+
Phe
GAA
[ENA]
¡û
>W1911576285
PDJX01000004
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
170286
170211
-
Phe
GAA
[ENA]
¡û
>W1911576383
PDJY01000057
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
5947
6022
+
Phe
GAA
[ENA]
¡û
>W1911576474
PDKC01000001
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
190517
190592
+
Phe
GAA
[ENA]
¡û
>W1911576477
PDKC01000002
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
16170
16245
+
Phe
GAA
[ENA]
¡û
>W1911576654
PDKG01000002
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
236271
236196
-
Phe
GAA
[ENA]
¡û
>W1911576656
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
280856
280781
-
Phe
GAA
[ENA]
¡û
>W1911576809
PDKJ01000021
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
17597
17672
+
Phe
GAA
[ENA]
¡û
>W1911576846
PDKK01000014
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
17517
17592
+
Phe
GAA
[ENA]
¡û
>W1911576877
PDKL01000006
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
171401
171326
-
Phe
GAA
[ENA]
¡û
>W1911576921
PDKM01000006
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
162652
162577
-
Phe
GAA
[ENA]
¡û
>W1911576959
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
160981
160906
-
Phe
GAA
[ENA]
¡û
>W1911576969
PDKN01000006
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
18730
18805
+
Phe
GAA
[ENA]
¡û
>W1911577006
PDKO01000006
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
148887
148812
-
Phe
GAA
[ENA]
¡û
>W1810295901
PTIW01000005
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
26848
26773
-
Phe
GAA
[ENA]
¡û
>W1810295918
PTIW01000024
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
18479
18554
+
Phe
GAA
[ENA]
¡û
>C10100569
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2639685
2639610
-
Phe
GAA
[Ensembl]
¡û
>C10100598
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
375937
375862
-
Phe
GAA
[Ensembl]
¡û
>W1511517382
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
254539
254614
+
Phe
GAA
[ENA]
¡û
>WENV068885
AACY023742816
Marine microbial communities from Global Ocean Sampling (GOS)
82
159
+
Phe
GAA
[ENA]
>W1710082875
BDIR01000017
Campylobacterota
Arcobacter sp. LA11 [BDIR]
16067
15992
-
Phe
GAA
[ENA]
¡û
>W1710602811
FUYO01000001
Campylobacterota
Malaciobacter marinus [FUYO]
18468
18543
+
Phe
GAA
[ENA]
¡û
>W1710602818
FUYO01000003
Campylobacterota
Malaciobacter marinus [FUYO]
43356
43281
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK