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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470638 (110 seq.)
>W131144868
AQFS01000073
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
1541
1615
+
Asn
GTT
[ENA]
¡û
>W131144880
AQFS01000076
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
31550
31476
-
Asn
GTT
[ENA]
¡û
>W131230484
AUHQ01000045
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AUHQ]
314
390
+
Asn
GTT
[ENA]
¡û
>W1711345193
MCNR01000004
Bacillota
Ligilactobacillus animalis [MCNR]
67007
66933
-
Asn
GTT
[ENA]
¡û
>W1711345242
MCNR01000009
Bacillota
Ligilactobacillus animalis [MCNR]
524
598
+
Asn
GTT
[ENA]
¡û
>W1711632492
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
215529
215455
-
Asn
GTT
[ENA]
¡û
>W1711632498
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
77270
77196
-
Asn
GTT
[ENA]
¡û
>W1711683650
MRYO01000010
Bacillota
Ligilactobacillus ruminis [MRYO]
8
82
+
Asn
GTT
[ENA]
¡û
>W1711683662
MRYO01000013
Bacillota
Ligilactobacillus ruminis [MRYO]
54717
54643
-
Asn
GTT
[ENA]
¡û
>W1711683718
MRYP01000012
Bacillota
Ligilactobacillus ruminis [MRYP]
58444
58370
-
Asn
GTT
[ENA]
¡û
>W1711683727
MRYP01000023
Bacillota
Ligilactobacillus ruminis [MRYP]
29778
29704
-
Asn
GTT
[ENA]
¡û
>W1711683782
MRYQ01000017
Bacillota
Ligilactobacillus ruminis [MRYQ]
50315
50241
-
Asn
GTT
[ENA]
¡û
>W1711683800
MRYQ01000041
Bacillota
Ligilactobacillus ruminis [MRYQ]
135
209
+
Asn
GTT
[ENA]
¡û
>WENV180117533
OARK01010376
[OARK] human gut metagenome; ENVO:feces
379
453
+
Asn
GTT
[ENA]
¢þ
>WENV180198828
OBAD01013636
[OBAD] human gut metagenome; ENVO:feces
493
567
+
Asn
GTT
[ENA]
¢þ
>WENV180231620
OBCN01087653
[OBCN] human gut metagenome; human gut
173
247
+
Asn
GTT
[ENA]
¢þ
>WENV180290309
OBIU01009490
[OBIU] human gut metagenome; human gut
872
946
+
Asn
GTT
[ENA]
¢þ
>WENV180319184
OBKN01000157
[OBKN] human gut metagenome; human gut
109
183
+
Asn
GTT
[ENA]
¢þ
>WENV180401955
OBRN01018987
[OBRN] human gut metagenome; ENVO:feces
487
413
-
Asn
GTT
[ENA]
¢þ
>WENV180828606
ODKA01015364
[ODKA] human metagenome; G_DNA_Stool
2104
2030
-
Asn
GTT
[ENA]
¢þ
>WENV181236672
OFEZ01004829
[OFEZ] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181240878
OFFE01013184
[OFFE] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181241933
OFFF01013716
[OFFF] mouse gut metagenome; faeces
448
522
+
Asn
GTT
[ENA]
¢þ
>WENV181244143
OFFH01016803
[OFFH] mouse gut metagenome; faeces
1958
1884
-
Asn
GTT
[ENA]
¢þ
>WENV181244598
OFFI01000319
[OFFI] mouse gut metagenome; faeces
531
605
+
Asn
GTT
[ENA]
¢þ
>WENV181247346
OFFK01018358
[OFFK] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181250378
OFFN01006002
[OFFN] mouse gut metagenome; faeces
1682
1608
-
Asn
GTT
[ENA]
¢þ
>WENV181252370
OFFP01014892
[OFFP] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181253829
OFFQ01072130
[OFFQ] mouse gut metagenome; faeces
111
37
-
Asn
GTT
[ENA]
¢þ
>WENV181254494
OFFR01011829
[OFFR] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181255604
OFFS01009535
[OFFS] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181256613
OFFT01013589
[OFFT] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181257364
OFFU01000747
[OFFU] mouse gut metagenome; faeces
29660
29586
-
Asn
GTT
[ENA]
¢þ
>WENV181262677
OFFY01015749
[OFFY] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181265023
OFGA01018963
[OFGA] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181266144
OFGB01017123
[OFGB] mouse gut metagenome; faeces
2272
2198
-
Asn
GTT
[ENA]
¢þ
>WENV181268499
OFGD01013369
[OFGD] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181269976
OFGE01017033
[OFGE] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181271241
OFGF01013049
[OFGF] mouse gut metagenome; faeces
2371
2297
-
Asn
GTT
[ENA]
¢þ
>WENV181272466
OFGG01015234
[OFGG] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181273841
OFGH01011715
[OFGH] mouse gut metagenome; faeces
530
604
+
Asn
GTT
[ENA]
¢þ
>WENV181276557
OFGK01009109
[OFGK] mouse gut metagenome; faeces
57
131
+
Asn
GTT
[ENA]
¢þ
>WENV181277728
OFGL01020367
[OFGL] mouse gut metagenome; faeces
530
604
+
Asn
GTT
[ENA]
¢þ
>WENV181279908
OFGN01009658
[OFGN] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181281142
OFGO01012636
[OFGO] mouse gut metagenome; faeces
2370
2296
-
Asn
GTT
[ENA]
¢þ
>WENV181283732
OFGQ01016088
[OFGQ] mouse gut metagenome; faeces
2370
2296
-
Asn
GTT
[ENA]
¢þ
>WENV181284974
OFGR01017771
[OFGR] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181287622
OFGX01016238
[OFGX] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181290252
OFHA01016013
[OFHA] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181299612
OFHM01017903
[OFHM] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181302390
OFHO01016985
[OFHO] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181303416
OFHP01012364
[OFHP] mouse gut metagenome; faeces
59
133
+
Asn
GTT
[ENA]
¢þ
>WENV181330027
OFLY01001133
[OFLY] human gut metagenome; human gut
17333
17259
-
Asn
GTT
[ENA]
¢þ
>WENV181355597
OFMT01004127
[OFMT] human gut metagenome; human gut
6526
6452
-
Asn
GTT
[ENA]
¢þ
>WENV181356498
OFMU01000098
[OFMU] human gut metagenome; human gut
66420
66346
-
Asn
GTT
[ENA]
¢þ
>WENV181714711
OGPR01004499
[OGPR] human gut metagenome; faeces
63
137
+
Asn
GTT
[ENA]
¢þ
>WENV181786127
OGRN01000808
[OGRN] human gut metagenome; faeces
28878
28804
-
Asn
GTT
[ENA]
¢þ
>WENV182295935
OHWG01000129
[OHWG] human gut metagenome; feces
109
183
+
Asn
GTT
[ENA]
¢þ
>WENV182304424
OHWZ01009674
[OHWZ] human gut metagenome; feces
87
13
-
Asn
GTT
[ENA]
¢þ
>WENV182359995
OICB01000045
[OICB] human gut metagenome; feces
76192
76118
-
Asn
GTT
[ENA]
¢þ
>WENV182362194
OICD01009333
[OICD] human gut metagenome; feces
2191
2117
-
Asn
GTT
[ENA]
¢þ
>WENV182364361
OICH01002214
[OICH] human gut metagenome; feces
1609
1535
-
Asn
GTT
[ENA]
¢þ
>WENV182370664
OICT01002098
[OICT] human gut metagenome; feces
7061
6987
-
Asn
GTT
[ENA]
¢þ
>WENV182376027
OIDD01002193
[OIDD] human gut metagenome; feces
7148
7074
-
Asn
GTT
[ENA]
¢þ
>WENV183283197
OLSD01000202
[OLSD] human gut metagenome; faeces
500
574
+
Asn
GTT
[ENA]
¢þ
>WENV183522839
ONZR01004220
[ONZR] human gut metagenome; human gut
63
137
+
Asn
GTT
[ENA]
¢þ
>WENV183553596
OOBK01017270
[OOBK] human gut metagenome; human gut
1239
1165
-
Asn
GTT
[ENA]
¢þ
>WENV183560994
OOBU01005692
[OOBU] human gut metagenome; human gut
1351
1277
-
Asn
GTT
[ENA]
¢þ
>WENV183723004
PDYJ01000024
[PDYJ] gut metagenome; fecal pellets
22186
22260
+
Asn
GTT
[ENA]
¢þ
>WENV183767234
PPYE01363038
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3651
3577
-
Asn
GTT
[ENA]
¢þ
>WENV183789049
PPYF01374248
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4
78
+
Asn
GTT
[ENA]
¢þ
>C181084728
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1408665
1408591
-
Asn
GTT
-
¡û
>C181084734
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1246855
1246781
-
Asn
GTT
-
¡û
>C181084784
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
926852
926926
+
Asn
GTT
-
¡û
>C181084790
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
1069046
1069120
+
Asn
GTT
-
¡û
>C191172066
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
415397
415471
+
Asn
GTT
-
¡û
>C191172072
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
566434
566508
+
Asn
GTT
-
¡û
>W141699152
JMHU01000011
Bacillota
Ligilactobacillus animalis [JMHU]
43561
43487
-
Asn
GTT
[ENA]
¡û
>W141699192
JMHU01000026
Bacillota
Ligilactobacillus animalis [JMHU]
66659
66585
-
Asn
GTT
[ENA]
¡û
>W09123103
ACGS01000024
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
6361
6287
-
Asn
GTT
[ENA]
¡û
>W09123128
ACGS01000146
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
117
191
+
Asn
GTT
[ENA]
¡û
>W1910611584
LFJL01000002
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
19167
19093
-
Asn
GTT
[ENA]
¡û
>W1910611598
LFJL01000014
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
44054
43980
-
Asn
GTT
[ENA]
¡û
>W1910611645
LFJM01000010
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
44053
43979
-
Asn
GTT
[ENA]
¡û
>W1910611685
LFJM01000037
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
19167
19093
-
Asn
GTT
[ENA]
¡û
>W1911814449
QZFR01000047
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
76
150
+
Asn
GTT
[ENA]
¡û
>W1911814470
QZFR01000151
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
76
150
+
Asn
GTT
[ENA]
¡û
>W1810225290
POVP01000010
Bacillota
Ligilactobacillus animalis NP51 [POVP]
2
76
+
Asn
GTT
[ENA]
¡û
>W1810225299
POVP01000016
Bacillota
Ligilactobacillus animalis NP51 [POVP]
2
76
+
Asn
GTT
[ENA]
¡û
>W1511007752
JHAB01000077
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
64
138
+
Asn
GTT
[ENA]
¡û
>W11168627
AFOJ01000001
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
8
82
+
Asn
GTT
[ENA]
¡û
>W11168678
AFOJ01000009
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
54
128
+
Asn
GTT
[ENA]
¡û
>W11176955
AFYE01000001
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
10
84
+
Asn
GTT
[ENA]
¡û
>W11176969
AFYE01000065
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
10
84
+
Asn
GTT
[ENA]
¡û
>C121004210
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
398826
398900
+
Asn
GTT
[Ensembl]
¡û
>C121004221
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
764107
764181
+
Asn
GTT
[Ensembl]
¡û
>W1610030994
AYYL01000074
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
3037
3111
+
Asn
GTT
[ENA]
¡û
>W1610031052
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
58
132
+
Asn
GTT
[ENA]
¡û
>W1610031066
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
78
152
+
Asn
GTT
[ENA]
¡û
>WENV079504
AATE01000662
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
161
84
-
Asn
GTT
[ENA]
>WENV079590
AATF01000907
Gut microbiome of Mouse lean and obese (C57BL/6J)
749
672
-
Asn
GTT
[ENA]
>W1710027946
AYYL01000074
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
3037
3111
+
Asn
GTT
[ENA]
¡û
>W1710028004
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
58
132
+
Asn
GTT
[ENA]
¡û
>W1710028018
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
78
152
+
Asn
GTT
[ENA]
¡û
>W1710081635
BDFM01000336
Bacillota
Ligilactobacillus murinus [BDFM]
37695
37621
-
Asn
GTT
[ENA]
¡û
>W1710081642
BDFM01000342
Bacillota
Ligilactobacillus murinus [BDFM]
2657
2583
-
Asn
GTT
[ENA]
¡û
>W1710546275
FOCC01000002
Bacillota
Ligilactobacillus ruminis [FOCC]
211146
211072
-
Asn
GTT
[ENA]
¡û
>W1710546309
FOCC01000012
Bacillota
Ligilactobacillus ruminis [FOCC]
133
207
+
Asn
GTT
[ENA]
¡û
>W1710562975
FOPI01000015
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
202
276
+
Asn
GTT
[ENA]
¡û
>W1710562984
FOPI01000026
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
202
276
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK