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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470646 (55 seq.)
>W1711345250
MCNR01000012
Bacillota
Ligilactobacillus animalis [MCNR]
1351
1277
-
Ala
TGC
[ENA]
¡û
>W1711345252
MCNR01000013
Bacillota
Ligilactobacillus animalis [MCNR]
626
700
+
Ala
TGC
[ENA]
¡û
>W1711345254
MCNR01000014
Bacillota
Ligilactobacillus animalis [MCNR]
485
411
-
Ala
TGC
[ENA]
¡û
>W1711345256
MCNR01000015
Bacillota
Ligilactobacillus animalis [MCNR]
131
57
-
Ala
TGC
[ENA]
¡û
>W1711345259
MCNR01000046
Bacillota
Ligilactobacillus animalis [MCNR]
802
728
-
Ala
TGC
[ENA]
¡û
>W1711683751
MRYP01000063
Bacillota
Ligilactobacillus ruminis [MRYP]
415
489
+
Ala
TGC
[ENA]
¡û
>W1711683813
MRYQ01000049
Bacillota
Ligilactobacillus ruminis [MRYQ]
226
152
-
Ala
TGC
[ENA]
¡û
>WENV180119959
OASE01038160
[OASE] human gut metagenome; ENVO:feces
346
272
-
Ala
TGC
[ENA]
¢þ
>WENV180290577
OBIU01042945
[OBIU] human gut metagenome; human gut
154
80
-
Ala
TGC
[ENA]
¢þ
>WENV180320364
OBKN01186625
[OBKN] human gut metagenome; human gut
150
76
-
Ala
TGC
[ENA]
¢þ
>WENV181235958
OFEY01009916
[OFEY] mouse gut metagenome; faeces
579
651
+
Ala
TGC
[ENA]
¢þ
>WENV181248523
OFFL01007668
[OFFL] mouse gut metagenome; faeces
126
200
+
Ala
TGC
[ENA]
¢þ
>WENV181250408
OFFN01006976
[OFFN] mouse gut metagenome; faeces
257
331
+
Ala
TGC
[ENA]
¢þ
>WENV181254736
OFFR01042674
[OFFR] mouse gut metagenome; faeces
145
71
-
Ala
TGC
[ENA]
¢þ
>WENV181258086
OFFU01032535
[OFFU] mouse gut metagenome; faeces
748
676
-
Ala
TGC
[ENA]
¢þ
>WENV181272573
OFGG01025469
[OFGG] mouse gut metagenome; faeces
749
675
-
Ala
TGC
[ENA]
¢þ
>WENV181273979
OFGH01024615
[OFGH] mouse gut metagenome; faeces
809
883
+
Ala
TGC
[ENA]
¢þ
>WENV181283939
OFGQ01049681
[OFGQ] mouse gut metagenome; faeces
801
873
+
Ala
TGC
[ENA]
¢þ
>WENV181285013
OFGR01021918
[OFGR] mouse gut metagenome; faeces
748
676
-
Ala
TGC
[ENA]
¢þ
>WENV181303356
OFHP01008078
[OFHP] mouse gut metagenome; faeces
144
72
-
Ala
TGC
[ENA]
¢þ
>WENV181356097
OFMT01027543
[OFMT] human gut metagenome; human gut
432
506
+
Ala
TGC
[ENA]
¢þ
>WENV181473464
OGFB01006347
[OGFB] metagenome; Human gut stool
1389
1315
-
Ala
TGC
[ENA]
¢þ
>WENV182320838
OHYJ01000692
[OHYJ] human gut metagenome; feces
58
132
+
Ala
TGC
[ENA]
¢þ
>WENV182362967
OICE01011348
[OICE] human gut metagenome; feces
51
125
+
Ala
TGC
[ENA]
¢þ
>WENV182925297
OKUI01036481
[OKUI] human gut metagenome; feces
501
427
-
Ala
TGC
[ENA]
¢þ
>WENV183047984
OLGF01031739
[OLGF] human gut metagenome; faeces
1249
1175
-
Ala
TGC
[ENA]
¢þ
>WENV183723249
PDYJ01000822
[PDYJ] gut metagenome; fecal pellets
14754
14828
+
Ala
TGC
[ENA]
¢þ
>WENV183723766
PDYJ01003118
[PDYJ] gut metagenome; fecal pellets
12427
12353
-
Ala
TGC
[ENA]
¢þ
>C181084707
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
116843
116917
+
Ala
TGC
-
¡û
>C181084717
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
2131732
2131806
+
Ala
TGC
-
¡û
>C181084727
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1412003
1411929
-
Ala
TGC
-
¡û
>C181084774
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
834050
834124
+
Ala
TGC
-
¡û
>C181084783
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
923514
923588
+
Ala
TGC
-
¡û
>C181084827
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
2219748
2219674
-
Ala
TGC
-
¡û
>C191172056
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
306282
306356
+
Ala
TGC
-
¡û
>C191172065
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
412060
412134
+
Ala
TGC
-
¡û
>C191172110
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
1637413
1637339
-
Ala
TGC
-
¡û
>W141699191
JMHU01000024
Bacillota
Ligilactobacillus animalis [JMHU]
157
231
+
Ala
TGC
[ENA]
¡û
>W09123136
ACGS01000159
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
134
208
+
Ala
TGC
[ENA]
¡û
>W1910611634
LFJL01000027
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
126
52
-
Ala
TGC
[ENA]
¡û
>W1910611638
LFJL01000031
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
2
76
+
Ala
TGC
[ENA]
¡û
>W1910611639
LFJL01000034
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
191
265
+
Ala
TGC
[ENA]
¡û
>W1910611644
LFJM01000003
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
126
52
-
Ala
TGC
[ENA]
¡û
>W1910611701
LFJM01000041
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
191
265
+
Ala
TGC
[ENA]
¡û
>W1910611702
LFJM01000042
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
2
76
+
Ala
TGC
[ENA]
¡û
>W1911754062
QWMU01000188
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
704
632
-
Ala
TGC
[ENA]
¡û
>C121004200
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
276054
276128
+
Ala
TGC
[Ensembl]
¡û
>C121004217
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
450679
450753
+
Ala
TGC
[Ensembl]
¡û
>W1610031006
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>WENV079374
AATC01000008
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
1032
955
-
Ala
TGC
[ENA]
>WENV079417
AATC01003800
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
248
325
+
Ala
TGC
[ENA]
>WENV079554
AATF01000050
Gut microbiome of Mouse lean and obese (C57BL/6J)
224
301
+
Ala
TGC
[ENA]
>W1710027958
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>W1710081624
BDFM01000218
Bacillota
Ligilactobacillus murinus [BDFM]
440
366
-
Ala
TGC
[ENA]
¡û
>W1710081632
BDFM01000291
Bacillota
Ligilactobacillus murinus [BDFM]
464
392
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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