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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470865 (128 seq.)
>W1711345207
MCNR01000005
Bacillota
Ligilactobacillus animalis [MCNR]
825
900
+
Thr
TGT
[ENA]
¡û
>W1711345237
MCNR01000008
Bacillota
Ligilactobacillus animalis [MCNR]
650
725
+
Thr
TGT
[ENA]
¡û
>W1711632487
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
310612
310537
-
Thr
TGT
[ENA]
¡û
>W1711632512
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
5306
5231
-
Thr
TGT
[ENA]
¡û
>W1711683644
MRYO01000009
Bacillota
Ligilactobacillus ruminis [MRYO]
372
447
+
Thr
TGT
[ENA]
¡û
>W1711683680
MRYO01000082
Bacillota
Ligilactobacillus ruminis [MRYO]
231
305
+
Thr
TGT
[ENA]
¡û
>W1711683696
MRYP01000006
Bacillota
Ligilactobacillus ruminis [MRYP]
86355
86281
-
Thr
TGT
[ENA]
¡û
>W1711683741
MRYP01000035
Bacillota
Ligilactobacillus ruminis [MRYP]
17492
17417
-
Thr
TGT
[ENA]
¡û
>W1711683757
MRYQ01000006
Bacillota
Ligilactobacillus ruminis [MRYQ]
91292
91218
-
Thr
TGT
[ENA]
¡û
>W1711683793
MRYQ01000028
Bacillota
Ligilactobacillus ruminis [MRYQ]
17537
17462
-
Thr
TGT
[ENA]
¡û
>W131144855
AQFS01000046
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
3481
3556
+
Thr
TGT
[ENA]
¡û
>W131230451
AUHP01000016
Bacillota
Ligilactobacillus ceti DSM 22408 [AUHP]
51236
51164
-
Thr
TGT
[ENA]
¡û
>WENV180289871
OBIU01000353
[OBIU] human gut metagenome; human gut
21374
21299
-
Thr
TGT
[ENA]
¢þ
>WENV180319836
OBKN01013025
[OBKN] human gut metagenome; human gut
361
435
+
Thr
TGT
[ENA]
¢þ
>WENV180320295
OBKN01157325
[OBKN] human gut metagenome; human gut
225
151
-
Thr
TGT
[ENA]
¢þ
>WENV180828630
ODKA01016023
[ODKA] human metagenome; G_DNA_Stool
1305
1231
-
Thr
TGT
[ENA]
¢þ
>WENV181239668
OFFD01003197
[OFFD] mouse gut metagenome; faeces
2226
2301
+
Thr
TGT
[ENA]
¢þ
>WENV181240318
OFFE01000799
[OFFE] mouse gut metagenome; faeces
3751
3826
+
Thr
TGT
[ENA]
¢þ
>WENV181242023
OFFF01024371
[OFFF] mouse gut metagenome; faeces
299
374
+
Thr
TGT
[ENA]
¢þ
>WENV181243962
OFFH01004272
[OFFH] mouse gut metagenome; faeces
4769
4694
-
Thr
TGT
[ENA]
¢þ
>WENV181247149
OFFK01006856
[OFFK] mouse gut metagenome; faeces
708
783
+
Thr
TGT
[ENA]
¢þ
>WENV181251559
OFFO01028930
[OFFO] mouse gut metagenome; faeces
135
60
-
Thr
TGT
[ENA]
¢þ
>WENV181254813
OFFR01071774
[OFFR] mouse gut metagenome; faeces
435
360
-
Thr
TGT
[ENA]
¢þ
>WENV181256084
OFFT01000220
[OFFT] mouse gut metagenome; faeces
337
412
+
Thr
TGT
[ENA]
¢þ
>WENV181257240
OFFU01000388
[OFFU] mouse gut metagenome; faeces
2264
2339
+
Thr
TGT
[ENA]
¢þ
>WENV181259919
OFFW01006303
[OFFW] mouse gut metagenome; faeces
4769
4694
-
Thr
TGT
[ENA]
¢þ
>WENV181264236
OFGA01000263
[OFGA] mouse gut metagenome; faeces
46541
46466
-
Thr
TGT
[ENA]
¢þ
>WENV181268008
OFGD01000359
[OFGD] mouse gut metagenome; faeces
752
827
+
Thr
TGT
[ENA]
¢þ
>WENV181269218
OFGE01000668
[OFGE] mouse gut metagenome; faeces
35671
35596
-
Thr
TGT
[ENA]
¢þ
>WENV181270573
OFGF01000275
[OFGF] mouse gut metagenome; faeces
3691
3766
+
Thr
TGT
[ENA]
¢þ
>WENV181272240
OFGG01005159
[OFGG] mouse gut metagenome; faeces
337
412
+
Thr
TGT
[ENA]
¢þ
>WENV181279343
OFGN01000417
[OFGN] mouse gut metagenome; faeces
752
827
+
Thr
TGT
[ENA]
¢þ
>WENV181280849
OFGO01002429
[OFGO] mouse gut metagenome; faeces
3752
3827
+
Thr
TGT
[ENA]
¢þ
>WENV181283443
OFGQ01003671
[OFGQ] mouse gut metagenome; faeces
6950
6875
-
Thr
TGT
[ENA]
¢þ
>WENV181285062
OFGR01027164
[OFGR] mouse gut metagenome; faeces
337
412
+
Thr
TGT
[ENA]
¢þ
>WENV181289936
OFHA01004085
[OFHA] mouse gut metagenome; faeces
299
374
+
Thr
TGT
[ENA]
¢þ
>WENV181298881
OFHM01000275
[OFHM] mouse gut metagenome; faeces
46531
46456
-
Thr
TGT
[ENA]
¢þ
>WENV181302110
OFHO01004259
[OFHO] mouse gut metagenome; faeces
299
374
+
Thr
TGT
[ENA]
¢þ
>WENV181303400
OFHP01011347
[OFHP] mouse gut metagenome; faeces
494
569
+
Thr
TGT
[ENA]
¢þ
>WENV181355234
OFMT01000979
[OFMT] human gut metagenome; human gut
213
288
+
Thr
TGT
[ENA]
¢þ
>WENV181398280
OFSD01047593
[OFSD] human gut metagenome; human gut
247
173
-
Thr
TGT
[ENA]
¢þ
>WENV181685026
OGOV01065042
[OGOV] human gut metagenome; faeces
130
204
+
Thr
TGT
[ENA]
¢þ
>WENV181713953
OGPR01000267
[OGPR] human gut metagenome; faeces
61781
61706
-
Thr
TGT
[ENA]
¢þ
>WENV181736377
OGQH01000328
[OGQH] human gut metagenome; faeces
1442
1517
+
Thr
TGT
[ENA]
¢þ
>WENV181786247
OGRN01001198
[OGRN] human gut metagenome; faeces
242
317
+
Thr
TGT
[ENA]
¢þ
>WENV181973484
OHAA01057397
[OHAA] human gut metagenome; faeces
214
289
+
Thr
TGT
[ENA]
¢þ
>WENV182291764
OHVZ01021982
[OHVZ] human gut metagenome; feces
120
46
-
Thr
TGT
[ENA]
¢þ
>WENV182295878
OHWG01000055
[OHWG] human gut metagenome; feces
362
437
+
Thr
TGT
[ENA]
¢þ
>W141229227
BAMM01000063
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
265
190
-
Thr
TGT
[ENA]
¡û
>WENV182344979
OIAM01011436
[OIAM] human gut metagenome; feces
548
474
-
Thr
TGT
[ENA]
¢þ
>WENV182353349
OIBL01002390
[OIBL] human gut metagenome; feces
3759
3834
+
Thr
TGT
[ENA]
¢þ
>WENV182360002
OICB01000045
[OICB] human gut metagenome; feces
75491
75416
-
Thr
TGT
[ENA]
¢þ
>WENV182362475
OICD01037663
[OICD] human gut metagenome; feces
362
437
+
Thr
TGT
[ENA]
¢þ
>WENV182364785
OICH01031840
[OICH] human gut metagenome; feces
201
276
+
Thr
TGT
[ENA]
¢þ
>WENV182370319
OICT01000043
[OICT] human gut metagenome; feces
75491
75416
-
Thr
TGT
[ENA]
¢þ
>WENV182374679
OIDB01021004
[OIDB] human gut metagenome; feces
115
190
+
Thr
TGT
[ENA]
¢þ
>WENV182375627
OIDD01000054
[OIDD] human gut metagenome; feces
75656
75581
-
Thr
TGT
[ENA]
¢þ
>WENV182389787
OIED01004115
[OIED] human gut metagenome; feces
623
548
-
Thr
TGT
[ENA]
¢þ
>WENV182927404
OKUM01030207
[OKUM] human gut metagenome; feces
212
286
+
Thr
TGT
[ENA]
¢þ
>WENV183284570
OLSD01030037
[OLSD] human gut metagenome; faeces
1335
1260
-
Thr
TGT
[ENA]
¢þ
>WENV183522940
ONZR01012998
[ONZR] human gut metagenome; human gut
286
361
+
Thr
TGT
[ENA]
¢þ
>WENV183553233
OOBK01001432
[OOBK] human gut metagenome; human gut
8747
8822
+
Thr
TGT
[ENA]
¢þ
>WENV183723252
PDYJ01000822
[PDYJ] gut metagenome; fecal pellets
18350
18425
+
Thr
TGT
[ENA]
¢þ
>WENV183723478
PDYJ01001869
[PDYJ] gut metagenome; fecal pellets
10005
10080
+
Thr
TGT
[ENA]
¢þ
>WENV183767696
PPYE01382532
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
869
794
-
Thr
TGT
[ENA]
¢þ
>C181084721
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
2135330
2135405
+
Thr
TGT
-
¡û
>C181084748
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1171744
1171669
-
Thr
TGT
-
¡û
>C181084778
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
837648
837723
+
Thr
TGT
-
¡û
>C181084804
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
1168946
1169021
+
Thr
TGT
-
¡û
>W09123078
ACGS01000001
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
80
154
+
Thr
TGT
[ENA]
¡û
>W09123120
ACGS01000073
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
110
185
+
Thr
TGT
[ENA]
¡û
>C191172060
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
309881
309956
+
Thr
TGT
-
¡û
>C191172086
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
638342
638417
+
Thr
TGT
-
¡û
>W141699162
JMHU01000019
Bacillota
Ligilactobacillus animalis [JMHU]
466
541
+
Thr
TGT
[ENA]
¡û
>W141699168
JMHU01000021
Bacillota
Ligilactobacillus animalis [JMHU]
249
324
+
Thr
TGT
[ENA]
¡û
>W1910611607
LFJL01000019
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
573
648
+
Thr
TGT
[ENA]
¡û
>W1910611658
LFJM01000018
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
573
648
+
Thr
TGT
[ENA]
¡û
>W1810225262
POVP01000004
Bacillota
Ligilactobacillus animalis NP51 [POVP]
260164
260089
-
Thr
TGT
[ENA]
¡û
>W1810225305
POVP01000021
Bacillota
Ligilactobacillus animalis NP51 [POVP]
76
1
-
Thr
TGT
[ENA]
¡û
>W1810834700
QSQR01000002
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
132
206
+
Thr
TGT
[ENA]
¡û
>W1810834735
QSQR01000007
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
162
237
+
Thr
TGT
[ENA]
¡û
>W1511007744
JHAB01000046
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
34517
34442
-
Thr
TGT
[ENA]
¡û
>W1511008079
JHAJ01000112
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
135
209
+
Thr
TGT
[ENA]
¡û
>W1511008103
JHAJ01000118
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
165
240
+
Thr
TGT
[ENA]
¡û
>W11168641
AFOJ01000002
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
604624
604550
-
Thr
TGT
[ENA]
¡û
>W11168672
AFOJ01000008
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
114568
114493
-
Thr
TGT
[ENA]
¡û
>W11176990
AFYE01000090
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
79
153
+
Thr
TGT
[ENA]
¡û
>W11176998
AFYE01000093
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
109
184
+
Thr
TGT
[ENA]
¡û
>C121004204
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
279670
279745
+
Thr
TGT
[Ensembl]
¡û
>C121004239
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
1503849
1503775
-
Thr
TGT
[Ensembl]
¡û
>W1610029409
AWYA01000058
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
795
721
-
Thr
TGT
[ENA]
¡û
>W1610029432
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
25050
24975
-
Thr
TGT
[ENA]
¡û
>W1610030985
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
140
215
+
Thr
TGT
[ENA]
¡û
>W1610031072
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
124
199
+
Thr
TGT
[ENA]
¡û
>W1610031091
AYYN01000150
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
4813
4738
-
Thr
TGT
[ENA]
¡û
>W1610031515
AYYW01000038
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
4586
4511
-
Thr
TGT
[ENA]
¡û
>W1610031547
AYYW01000053
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
549
624
+
Thr
TGT
[ENA]
¡û
>W1610037033
AZFT01000039
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
265
190
-
Thr
TGT
[ENA]
¡û
>W1610037044
AZFT01000048
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
162
237
+
Thr
TGT
[ENA]
¡û
>W1610037055
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
999092
999017
-
Thr
TGT
[ENA]
¡û
>W1610073246
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
17363
17288
-
Thr
TGT
[ENA]
¡û
>W1610073263
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1668
1594
-
Thr
TGT
[ENA]
¡û
>W1610529301
JQBZ01000008
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
51191
51119
-
Thr
TGT
[ENA]
¡û
>W1610529306
JQBZ01000009
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
2
74
+
Thr
TGT
[ENA]
¡û
>W1610529335
JQBZ01000026
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
16715
16643
-
Thr
TGT
[ENA]
¡û
>WENV079381
AATC01000024
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
1666
1741
+
Thr
TGT
[ENA]
>WENV079425
AATC01004403
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
433
358
-
Thr
TGT
[ENA]
>WENV079449
AATC01005664
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
304
229
-
Thr
TGT
[ENA]
>WENV079558
AATF01000050
Gut microbiome of Mouse lean and obese (C57BL/6J)
3822
3897
+
Thr
TGT
[ENA]
>W1710026779
AWYA01000058
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
795
721
-
Thr
TGT
[ENA]
¡û
>W1710026802
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
25050
24975
-
Thr
TGT
[ENA]
¡û
>W1710027937
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
140
215
+
Thr
TGT
[ENA]
¡û
>W1710028024
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
124
199
+
Thr
TGT
[ENA]
¡û
>W1710028043
AYYN01000150
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
4813
4738
-
Thr
TGT
[ENA]
¡û
>W1710028442
AYYW01000038
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
4586
4511
-
Thr
TGT
[ENA]
¡û
>W1710028474
AYYW01000053
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
549
624
+
Thr
TGT
[ENA]
¡û
>W1710034072
AZFT01000039
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
265
190
-
Thr
TGT
[ENA]
¡û
>W1710034083
AZFT01000048
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
162
237
+
Thr
TGT
[ENA]
¡û
>W1710034094
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
999092
999017
-
Thr
TGT
[ENA]
¡û
>W1710070364
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
17363
17288
-
Thr
TGT
[ENA]
¡û
>W1710070381
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1668
1594
-
Thr
TGT
[ENA]
¡û
>W1710081594
BDFM01000111
Bacillota
Ligilactobacillus murinus [BDFM]
247
172
-
Thr
TGT
[ENA]
¡û
>W1710081599
BDFM01000112
Bacillota
Ligilactobacillus murinus [BDFM]
247
172
-
Thr
TGT
[ENA]
¡û
>W1710562951
FOPI01000007
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
86509
86435
-
Thr
TGT
[ENA]
¡û
>W1710562999
FOPI01000036
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
597
672
+
Thr
TGT
[ENA]
¡û
>W1710630891
JQBZ01000008
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
51191
51119
-
Thr
TGT
[ENA]
¡û
>W1710630896
JQBZ01000009
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
2
74
+
Thr
TGT
[ENA]
¡û
>W1710630925
JQBZ01000026
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
16715
16643
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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