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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470903 (98 seq.)
>W1711089675
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
150016
149941
-
Ala
TGC
[ENA]
¡û
>W1711178678
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73053
73128
+
Ala
TGC
[ENA]
¡û
>W1711302020
MAIQ01000023
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
1841
1916
+
Ala
TGC
[ENA]
¡û
>W1711302067
MAIR01000030
Bacillota
Christensenella minuta [MAIR]
1837
1912
+
Ala
TGC
[ENA]
¡û
>C171130792
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
2558351
2558276
-
Ala
TGC
-
¡û
>C171130822
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
553993
553918
-
Ala
TGC
-
¡û
>C171130825
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
3474
3399
-
Ala
TGC
-
¡û
>WENV180373124
OBOI01204695
[OBOI] sediment metagenome; sediment
118
193
+
Ala
TGC
[ENA]
¢þ
>WENV180540870
OCHR01005060
[OCHR] human gut metagenome; human gut
58
133
+
Ala
TGC
[ENA]
¢þ
>WENV180829226
ODKA01086629
[ODKA] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¢þ
>WENV181198531
OERE01007833
[OERE] metagenome; Caecal content
1027
952
-
Ala
TGC
[ENA]
¢þ
>WENV181244287
OFFH01047369
[OFFH] mouse gut metagenome; faeces
152
227
+
Ala
TGC
[ENA]
¢þ
>WENV181245282
OFFI01061804
[OFFI] mouse gut metagenome; faeces
436
361
-
Ala
TGC
[ENA]
¢þ
>WENV181262861
OFFY01050125
[OFFY] mouse gut metagenome; faeces
532
457
-
Ala
TGC
[ENA]
¢þ
>WENV181264008
OFFZ01070099
[OFFZ] mouse gut metagenome; faeces
544
469
-
Ala
TGC
[ENA]
¢þ
>WENV181267574
OFGC01020529
[OFGC] mouse gut metagenome; faeces
318
393
+
Ala
TGC
[ENA]
¢þ
>WENV181271554
OFGF01060605
[OFGF] mouse gut metagenome; faeces
638
563
-
Ala
TGC
[ENA]
¢þ
>WENV181284006
OFGQ01080808
[OFGQ] mouse gut metagenome; faeces
576
501
-
Ala
TGC
[ENA]
¢þ
>WENV181347713
OFMM01022758
[OFMM] human gut metagenome; human gut
137
212
+
Ala
TGC
[ENA]
¢þ
>WENV181662131
OGOG01017243
[OGOG] human gut metagenome; faeces
2240
2165
-
Ala
TGC
[ENA]
¢þ
>WENV181727876
OGQA01007053
[OGQA] human gut metagenome; faeces
187
112
-
Ala
TGC
[ENA]
¢þ
>WENV181733942
OGQE01031273
[OGQE] human gut metagenome; faeces
721
646
-
Ala
TGC
[ENA]
¢þ
>WENV181739160
OGQI01066201
[OGQI] human gut metagenome; faeces
149
224
+
Ala
TGC
[ENA]
¢þ
>WENV181750922
OGQP01015948
[OGQP] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV181803744
OGSD01045844
[OGSD] human gut metagenome; faeces
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV181861580
OGWR01079051
[OGWR] human gut metagenome; faeces
391
316
-
Ala
TGC
[ENA]
¢þ
>WENV181982290
OHAG01047495
[OHAG] human gut metagenome; faeces
529
454
-
Ala
TGC
[ENA]
¢þ
>WENV181984730
OHAI01048608
[OHAI] human gut metagenome; faeces
46
121
+
Ala
TGC
[ENA]
¢þ
>WENV182299628
OHWK01026471
[OHWK] human gut metagenome; feces
49
124
+
Ala
TGC
[ENA]
¢þ
>WENV182307834
OHXF01013744
[OHXF] human gut metagenome; feces
814
739
-
Ala
TGC
[ENA]
¢þ
>WENV182315364
OHYB01020260
[OHYB] human gut metagenome; feces
755
680
-
Ala
TGC
[ENA]
¢þ
>WENV182316759
OHYD01020155
[OHYD] human gut metagenome; feces
36
111
+
Ala
TGC
[ENA]
¢þ
>WENV182321804
OHYM01021263
[OHYM] human gut metagenome; feces
546
471
-
Ala
TGC
[ENA]
¢þ
>WENV182327380
OHYW01008631
[OHYW] human gut metagenome; feces
164
239
+
Ala
TGC
[ENA]
¢þ
>WENV182328007
OHZB01023586
[OHZB] human gut metagenome; feces
132
207
+
Ala
TGC
[ENA]
¢þ
>WENV182331554
OHZI01008472
[OHZI] human gut metagenome; feces
572
647
+
Ala
TGC
[ENA]
¢þ
>WENV182341252
OIAF01015579
[OIAF] human gut metagenome; feces
825
750
-
Ala
TGC
[ENA]
¢þ
>WENV182341284
OIAF01021539
[OIAF] human gut metagenome; feces
660
585
-
Ala
TGC
[ENA]
¢þ
>WENV182345505
OIAN01019944
[OIAN] human gut metagenome; feces
229
304
+
Ala
TGC
[ENA]
¢þ
>WENV182356187
OIBQ01024098
[OIBQ] human gut metagenome; feces
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV182357241
OIBS01023729
[OIBS] human gut metagenome; feces
651
576
-
Ala
TGC
[ENA]
¢þ
>WENV182358262
OIBU01010292
[OIBU] human gut metagenome; feces
573
498
-
Ala
TGC
[ENA]
¢þ
>WENV182512883
OIWL01037176
[OIWL] human gut metagenome; faeces
721
646
-
Ala
TGC
[ENA]
¢þ
>WENV182526972
OIWT01113212
[OIWT] human gut metagenome; faeces
322
247
-
Ala
TGC
[ENA]
¢þ
>WENV182606532
OJJT01020962
[OJJT] metagenome; faeces
527
452
-
Ala
TGC
[ENA]
¢þ
>WENV182609427
OJJV01007864
[OJJV] metagenome; faeces
2493
2418
-
Ala
TGC
[ENA]
¢þ
>C08005396
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
1820854
1820929
+
Ala
TGC
[Ensembl]
¡û
>C08005452
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2796895
2796823
-
Ala
TGC
[Ensembl]
¡û
>WENV182999961
OLCB01016486
[OLCB] human gut metagenome; human gut
42
117
+
Ala
TGC
[ENA]
¢þ
>WENV183111378
OLNO01017374
[OLNO] human gut metagenome; faeces
2240
2165
-
Ala
TGC
[ENA]
¢þ
>WENV183124847
OLNW01057415
[OLNW] human gut metagenome; faeces
676
601
-
Ala
TGC
[ENA]
¢þ
>WENV183134987
OLOD01010542
[OLOD] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV183143404
OLOK01035125
[OLOK] human gut metagenome; faeces
168
243
+
Ala
TGC
[ENA]
¢þ
>WENV183152806
OLOQ01014705
[OLOQ] human gut metagenome; faeces
2768
2693
-
Ala
TGC
[ENA]
¢þ
>WENV183154743
OLOR01011747
[OLOR] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV183176688
OLPF01034802
[OLPF] human gut metagenome; faeces
711
636
-
Ala
TGC
[ENA]
¢þ
>WENV183178221
OLPG01045068
[OLPG] human gut metagenome; faeces
565
490
-
Ala
TGC
[ENA]
¢þ
>WENV183185725
OLPN01025288
[OLPN] human gut metagenome; faeces
176
251
+
Ala
TGC
[ENA]
¢þ
>WENV183194188
OLPS01034330
[OLPS] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV183197175
OLPU01017919
[OLPU] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¢þ
>WENV183199458
OLPV01069493
[OLPV] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¢þ
>WENV183226852
OLQO01026077
[OLQO] human gut metagenome; faeces
1273
1198
-
Ala
TGC
[ENA]
¢þ
>WENV183232511
OLQU01018263
[OLQU] human gut metagenome; faeces
173
248
+
Ala
TGC
[ENA]
¢þ
>WENV183234355
OLQV01029510
[OLQV] human gut metagenome; faeces
1319
1244
-
Ala
TGC
[ENA]
¢þ
>WENV183247996
OLRF01017158
[OLRF] human gut metagenome; faeces
2217
2142
-
Ala
TGC
[ENA]
¢þ
>WENV183268893
OLRU01037828
[OLRU] human gut metagenome; faeces
617
542
-
Ala
TGC
[ENA]
¢þ
>WENV183273604
OLRX01017223
[OLRX] human gut metagenome; faeces
1783
1708
-
Ala
TGC
[ENA]
¢þ
>WENV183275359
OLRY01036081
[OLRY] human gut metagenome; faeces
821
746
-
Ala
TGC
[ENA]
¢þ
>WENV183286626
OLSE01026961
[OLSE] human gut metagenome; faeces
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV183296287
OLSL01026592
[OLSL] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¢þ
>WENV183372565
OLXW01032603
[OLXW] human gut metagenome; feces
97
172
+
Ala
TGC
[ENA]
¢þ
>WENV183641160
OQVL01022579
[OQVL] human gut metagenome; human gut
779
704
-
Ala
TGC
[ENA]
¢þ
>WENV183768681
PPYE01395314
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
148
223
+
Ala
TGC
[ENA]
¢þ
>WENV170690345
LFRM01336425
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
413
488
+
Ala
TGC
[ENA]
¢þ
>C181058745
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
1121724
1121799
+
Ala
TGC
-
¡û
>C181058768
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
3505445
3505370
-
Ala
TGC
-
¡û
>C191063472
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
468243
468318
+
Ala
TGC
-
¡û
>C191063500
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
1735431
1735356
-
Ala
TGC
-
¡û
>W09108841
ABTQ01000018
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
60876
60801
-
Ala
TGC
[ENA]
¡û
>W09108887
ABTQ01000155
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
2185
2260
+
Ala
TGC
[ENA]
¡û
>C10104790
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
273242
273317
+
Ala
TGC
[Ensembl]
¡û
>C10104838
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3754348
3754273
-
Ala
TGC
[Ensembl]
¡û
>C10113235
CP002028
Bacillota
Thermincola potens JR [CP002028]
84571
84646
+
Ala
TGC
[Ensembl]
¡û
>C10113237
CP002028
Bacillota
Thermincola potens JR [CP002028]
246459
246534
+
Ala
TGC
[Ensembl]
¡û
>W1511585259
LAYJ01000016
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
1627
1702
+
Ala
TGC
[ENA]
¡û
>W1511585268
LAYJ01000068
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
198360
198285
-
Ala
TGC
[ENA]
¡û
>W1511706138
LGTE01000071
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
239
164
-
Ala
TGC
[ENA]
¡û
>W1610501852
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
334857
334782
-
Ala
TGC
[ENA]
¡û
>W1610501854
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3368
3293
-
Ala
TGC
[ENA]
¡û
>W1610501899
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3368
3293
-
Ala
TGC
[ENA]
¡û
>W1610924132
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
150016
149941
-
Ala
TGC
[ENA]
¡û
>W1610986725
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73053
73128
+
Ala
TGC
[ENA]
¡û
>W1611052808
MAIQ01000023
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
1841
1916
+
Ala
TGC
[ENA]
¡û
>W1611052855
MAIR01000030
Bacillota
Christensenella minuta [MAIR]
1837
1912
+
Ala
TGC
[ENA]
¡û
>ENV000096
AB364196
Environmental sample from ENV division of INSDC
353
430
+
Ala
TGC
[ENA]
>W1710495322
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
334857
334782
-
Ala
TGC
[ENA]
¡û
>W1710495324
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3368
3293
-
Ala
TGC
[ENA]
¡û
>W1710495369
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3368
3293
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK