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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470913 (30 seq.)
>W1711081920
LSTF01000052
Betaproteobacteria
Betaproteobacteria bacterium SCGC AG-212-J23 [LSTF]
20409
20334
-
Lys
TTT
[ENA]
¡û
>W131202910
ASXI01000071
Betaproteobacteria
Paraburkholderia phenoliruptrix AC1100 [ASXI]
35167
35092
-
Lys
TTT
[ENA]
¡û
>W131218536
ATXV01000002
Betaproteobacteria
Burkholderia sp. URHA0054 [ATXV]
290278
290203
-
Lys
TTT
[ENA]
¡û
>WENV180320960
OBKQ01069950
[OBKQ] soil metagenome; Clay
336
411
+
Lys
TTT
[ENA]
¢þ
>WENV180373166
OBOI01216238
[OBOI] sediment metagenome; sediment
274
199
-
Lys
TTT
[ENA]
¢þ
>WENV180695474
OCZS013524025
[OCZS] soil metagenome; soil
186
111
-
Lys
TTT
[ENA]
¢þ
>WENV181286495
OFGW01000928
[OFGW] soil metagenome; Clay
3399
3474
+
Lys
TTT
[ENA]
¢þ
>WENV181288056
OFGY01005540
[OFGY] soil metagenome; Clay
183
108
-
Lys
TTT
[ENA]
¢þ
>W141149781
AWZV01000001
Betaproteobacteria
Burkholderia sp. WSM2232 [AWZV]
386163
386088
-
Lys
TTT
[ENA]
¡û
>W141150409
AXAJ01000005
Betaproteobacteria
Burkholderia sp. WSM2230 [AXAJ]
352360
352435
+
Lys
TTT
[ENA]
¡û
>W08008481
ABLD01000002
Betaproteobacteria
Paraburkholderia graminis C4D1M [ABLD]
16163
16091
-
Lys
TTT
[ENA]
¡û
>W141219903
AZXJ01000035
Betaproteobacteria
Burkholderia sp. JPY366 [AZXJ]
18831
18756
-
Lys
TTT
[ENA]
¡û
>WENV183665443
ORJL010463743
[ORJL] groundwater metagenome; groundwater
665
590
-
Lys
TTT
[ENA]
¢þ
>WENV183668137
ORJL010714621
[ORJL] groundwater metagenome; groundwater
1022
947
-
Lys
TTT
[ENA]
¢þ
>WENV183675611
ORJL011528510
[ORJL] groundwater metagenome; groundwater
434
359
-
Lys
TTT
[ENA]
¢þ
>WENV170554096
CXWK01046189
[CXWK] wastewater metagenome; activated sludge
6323
6398
+
Lys
TTT
[ENA]
¢þ
>C181109041
CP024935
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
2408512
2408437
-
Lys
TTT
-
¡û
>W1910699065
MEQV01000222
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 [MEQV]
218
143
-
Lys
TTT
[ENA]
¡û
>W1810477164
QAOP01000002
Betaproteobacteria
Paraburkholderia sp. GV072 [QAOP]
310150
310075
-
Lys
TTT
[ENA]
¡û
>W1810513927
QBUB01000002
Betaproteobacteria
Paraburkholderia sp. GV068 [QBUB]
310150
310075
-
Lys
TTT
[ENA]
¡û
>W1810676575
QKMC01000002
Betaproteobacteria
Paraburkholderia sp. GV052 [QKMC]
310150
310075
-
Lys
TTT
[ENA]
¡û
>C151004858
CP003864
Betaproteobacteria
Paraburkholderia phenoliruptrix BR3459a [CP003863, CP003864]
1066329
1066254
-
Lys
TTT
[Ensembl]
¡û
>C151092490
CP012193
Betaproteobacteria
Burkholderia sp. HB1 [CP012192, CP012193]
1622268
1622343
+
Lys
TTT
-
¡û
>W10111435
ADDJ01000006
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
18492
18417
-
Lys
TTT
[ENA]
¡û
>W10115217
ADJP01000001
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
386532
386607
+
Lys
TTT
[ENA]
¡û
>C11104334
CP002520
Betaproteobacteria
Burkholderia sp. CCGE1001 [CP002520]
1055544
1055469
-
Lys
TTT
[Ensembl]
¡û
>C11104390
CP002218
Betaproteobacteria
Burkholderia sp. CCGE1003 [CP002218]
1649911
1649986
+
Lys
TTT
[Ensembl]
¡û
>W11114378
ADDJ01000006
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
18492
18417
-
Lys
TTT
[ENA]
¡û
>W11118803
ADJP01000001
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
386532
386607
+
Lys
TTT
[ENA]
¡û
>W1610920755
LSTF01000052
Betaproteobacteria
Betaproteobacteria bacterium SCGC AG-212-J23 [LSTF]
20409
20334
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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