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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47106 (46 seq.)
>W1711738531
MUBF01000010
Gammaproteobacteria
Raoultella terrigena [MUBF]
1421
1510
+
Ser
CGA
[ENA]
¡û
>W131205510
ATDT01000023
Gammaproteobacteria
Cedecea davisae DSM 4568 [ATDT]
262315
262226
-
Ser
CGA
[ENA]
¡û
>WENV182613881
OJKA01026777
[OJKA] metagenome; faeces
404
315
-
Ser
CGA
[ENA]
¢þ
>WENV183065467
OLIJ01000100
[OLIJ] metagenome; faeces
41542
41453
-
Ser
CGA
[ENA]
¢þ
>WENV183731205
PJTS01018988
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
325
236
-
Ser
CGA
[ENA]
¢þ
>WENV183788885
PPYF01370890
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10851
10762
-
Ser
CGA
[ENA]
¢þ
>WENV170001495
AGFS01062098
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
352
441
+
Ser
CGA
[ENA]
¢þ
>WENV170001723
AGFS01134847
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
495
406
-
Ser
CGA
[ENA]
¢þ
>WENV170001788
AGFS01161838
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
245
334
+
Ser
CGA
[ENA]
¢þ
>WENV170001872
AGFT01017760
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
423
334
-
Ser
CGA
[ENA]
¢þ
>C181031869
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
2763580
2763491
-
Ser
CGA
-
¡û
>C181083602
CP023525
Gammaproteobacteria
Cedecea neteri FDAARGOS_392 [CP023525]
1721428
1721517
+
Ser
CGA
-
¡û
>C181166471
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
2737537
2737626
+
Ser
CGA
-
¡û
>C191193334
LR131271
Gammaproteobacteria
Raoultella terrigena NCTC13098 [LR131271]
2201476
2201565
+
Ser
CGA
-
¡û
>C191196347
LR134138
Gammaproteobacteria
Kluyvera intermedia NCTC12125 [LR134138]
654211
654300
+
Ser
CGA
-
¡û
>C191202716
LR134253
Gammaproteobacteria
Raoultella terrigena NCTC9997 [LR134251, LR134253]
1988411
1988500
+
Ser
CGA
-
¡û
>W1910183264
BJNO01000019
Gammaproteobacteria
Raoultella terrigena NBRC 14941 [BJNO]
99563
99652
+
Ser
CGA
[ENA]
¡û
>W1910650809
LYLP01000007
Gammaproteobacteria
Scandinavium goeteborgense CCUG 66741 [LYLP]
73400
73311
-
Ser
CGA
[ENA]
¡û
>W1910930019
NISF01000004
Gammaproteobacteria
Enterobacter sp. 10-1 [NISF]
85632
85721
+
Ser
CGA
[ENA]
¡û
>W1911492989
OBEF01000025
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
1107
1196
+
Ser
CGA
[ENA]
¡û
>W1810185345
PKFT01000004
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
135056
134967
-
Ser
CGA
[ENA]
¡û
>W1810185385
PKFU01000002
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
342310
342221
-
Ser
CGA
[ENA]
¡û
>W1810185470
PKFV01000003
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
342311
342222
-
Ser
CGA
[ENA]
¡û
>W1810266216
PQVR01000001
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
434722
434633
-
Ser
CGA
[ENA]
¡û
>W1810266349
PQVS01000014
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
39200
39111
-
Ser
CGA
[ENA]
¡û
>W1810266415
PQVT01000011
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
39200
39111
-
Ser
CGA
[ENA]
¡û
>W1810266502
PQVU01000012
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
39200
39111
-
Ser
CGA
[ENA]
¡û
>W1810266580
PQVV01000012
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
39200
39111
-
Ser
CGA
[ENA]
¡û
>W1810266654
PQVW01000011
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
39200
39111
-
Ser
CGA
[ENA]
¡û
>W1810402746
PYHO01000021
Gammaproteobacteria
Kluyvera genomosp. 2 KA2 [PYHO]
38274
38185
-
Ser
CGA
[ENA]
¡û
>W1810676668
QKME01000002
Gammaproteobacteria
Scandinavium goeteborgense YR018 [QKME]
555357
555446
+
Ser
CGA
[ENA]
¡û
>C151051437
CP009451
Gammaproteobacteria
Cedecea neteri SSMD04 [CP009451]
4447760
4447849
+
Ser
CGA
[Ensembl]
¡û
>C151071437
CP010557
Gammaproteobacteria
Raoultella ornithinolytica S12 [CP010557]
4047821
4047732
-
Ser
CGA
[Ensembl]
¡û
>C151076345
CP011077
Gammaproteobacteria
Klebsiella michiganensis RC10 [CP011077]
3028870
3028781
-
Ser
CGA
[Ensembl]
¡û
>WENV11101567
AGFS01062098
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
352
441
+
Ser
CGA
[ENA]
¡û
>WENV11101795
AGFS01134847
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
495
406
-
Ser
CGA
[ENA]
¡û
>WENV11101860
AGFS01161838
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
245
334
+
Ser
CGA
[ENA]
¡û
>WENV11101944
AGFT01017760
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
423
334
-
Ser
CGA
[ENA]
¡û
>W1511346539
JRHG01000021
Gammaproteobacteria
Cedecea neteri SSMD04 [JRHG]
146465
146554
+
Ser
CGA
[ENA]
¡û
>W1511389643
JSWZ01000002
Gammaproteobacteria
Enterobacter cloacae CH1 [JSWZ]
541245
541334
+
Ser
CGA
[ENA]
¡û
>W1511573788
LANE01000009
Gammaproteobacteria
Raoultella terrigena R1Gly [LANE]
812515
812426
-
Ser
CGA
[ENA]
¡û
>W1511698571
LGHZ01000015
Gammaproteobacteria
Kluyvera genomosp. 1 L2 [LGHZ]
141544
141455
-
Ser
CGA
[ENA]
¡û
>W1610070693
BCTL01000074
Gammaproteobacteria
Cedecea neteri NBRC 105707 = ATCC 33855 [BCTL]
17953
17864
-
Ser
CGA
[ENA]
¡û
>W1610070704
BCTM01000001
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
155661
155572
-
Ser
CGA
[ENA]
¡û
>W1610076432
BCYS01000028
Gammaproteobacteria
Kluyvera intermedia NBRC 102594 = ATCC 33110 [BCYS]
986
1075
+
Ser
CGA
[ENA]
¡û
>W1710068026
BCTM01000001
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
155661
155572
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK