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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47128 (49 seq.)
>W1711575788
MNJM01000233
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
2245
2158
-
Ser
GGA
[ENA]
¡û
>W131230989
AUIC01000002
Actinomycetota
Pseudoclavibacter soli DSM 23366 [AUIC]
264141
264228
+
Ser
GGA
[ENA]
¡û
>WENV180945049
ODUC01062009
[ODUC] human metagenome; G_DNA_Supragingival plaque
374
459
+
Ser
GGA
[ENA]
¢þ
>W141145365
AWUN01000001
Actinomycetota
Bifidobacterium sp. 7101 [AWUN]
174762
174675
-
Ser
GGA
[ENA]
¡û
>W141145433
AWUO01000009
Actinomycetota
Bifidobacterium sp. A11 [AWUO]
17784
17871
+
Ser
GGA
[ENA]
¡û
>C181027247
CP017696
Actinomycetota
Bifidobacterium asteroides DSM 20089 [CP017696]
137592
137505
-
Ser
GGA
-
¡û
>W141523574
JGYK01000001
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JGYK]
1106219
1106306
+
Ser
GGA
[ENA]
¡û
>W1910803645
MTBP01000001
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
910583
910496
-
Ser
GGA
[ENA]
¡û
>W1910828898
MWWQ01000008
Actinomycetota
Pseudoscardovia suis DSM 24744 [MWWQ]
161991
162078
+
Ser
GGA
[ENA]
¡û
>W1910828934
MWWR01000004
Actinomycetota
Pseudoscardovia radai DSM 24742 [MWWR]
134512
134427
-
Ser
GGA
[ENA]
¡û
>W1911162343
NPOQ01000013
Actinomycetota
Bifidobacterium sp. wkB344 [NPOQ]
25196
25109
-
Ser
GGA
[ENA]
¡û
>W1911162389
NPOR01000034
Actinomycetota
Bifidobacterium sp. wkB338 [NPOR]
14835
14922
+
Ser
GGA
[ENA]
¡û
>W1810049611
PCHJ01000006
Actinomycetota
Bifidobacterium asteroides 1460B [PCHJ]
71617
71530
-
Ser
GGA
[ENA]
¡û
>W1810052421
PDCH01000010
Actinomycetota
Bifidobacterium xylocopae XV2 [PDCH]
18673
18586
-
Ser
GGA
[ENA]
¡û
>W1810069402
PEBI01000001
Actinomycetota
Bifidobacterium primatium TRE 1 [PEBI]
722405
722492
+
Ser
GGA
[ENA]
¡û
>W1810089979
PGFC01000002
Actinomycetota
Pseudoscardovia suis DSM 24744 [PGFC]
67151
67064
-
Ser
GGA
[ENA]
¡û
>W1810368693
PVZV01000001
Actinomycetota
Actinocorallia populi A251 [PVZV]
748960
748873
-
Ser
GGA
[ENA]
¡û
>W1810586687
QFFN01000008
Actinomycetota
Bifidobacterium catulorum MRM 8.19 [QFFN]
82107
82020
-
Ser
GGA
[ENA]
¡û
>W1810603494
QGLH01000001
Actinomycetota
Bifidobacterium asteroides ESL0170 [QGLH]
326454
326367
-
Ser
GGA
[ENA]
¡û
>W1810603530
QGLI01000004
Actinomycetota
Bifidobacterium indicum ESL0197 [QGLI]
40718
40631
-
Ser
GGA
[ENA]
¡û
>W1810603572
QGLJ01000005
Actinomycetota
Bifidobacterium asteroides ESL0198 [QGLJ]
162968
162881
-
Ser
GGA
[ENA]
¡û
>W1810603615
QGLK01000001
Actinomycetota
Bifidobacterium asteroides ESL0199 [QGLK]
273911
273824
-
Ser
GGA
[ENA]
¡û
>W1810603649
QGLL01000001
Actinomycetota
Bifidobacterium asteroides ESL0200 [QGLL]
281042
280955
-
Ser
GGA
[ENA]
¡û
>C151000642
AP012333
Actinomycetota
Parascardovia denticolens DSM 10105 = JCM 12538 [AP012333]
288631
288546
-
Ser
GGA
[Ensembl]
¡û
>C151000664
AP012334
Actinomycetota
Scardovia inopinata JCM 12537 [AP012334]
1463542
1463627
+
Ser
GGA
[Ensembl]
¡û
>C151008633
CP006018
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [CP006018]
260287
260200
-
Ser
GGA
[Ensembl]
¡û
>C151021881
CP007287
Actinomycetota
Bifidobacterium coryneforme LMG18911 [CP007287]
273657
273570
-
Ser
GGA
[Ensembl]
¡û
>C151086285
CP011786
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [CP011786]
1164689
1164776
+
Ser
GGA
-
¡û
>W10111195
ADCX01000012
Actinomycetota
Scardovia inopinata F0304 [ADCX]
17122
17037
-
Ser
GGA
[ENA]
¡û
>W10112133
ADEB01000017
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
72562
72477
-
Ser
GGA
[ENA]
¡û
>W11114046
ADCX01000012
Actinomycetota
Scardovia inopinata F0304 [ADCX]
17122
17037
-
Ser
GGA
[ENA]
¡û
>W11115110
ADEB01000017
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
72562
72477
-
Ser
GGA
[ENA]
¡û
>W1511483980
JWME01000004
Actinomycetota
Bifidobacterium asteroides Bin2 [JWME]
107076
106989
-
Ser
GGA
[ENA]
¡û
>W1511484020
JWMF01000003
Actinomycetota
Bifidobacterium mellis Bin7 [JWMF]
174979
174892
-
Ser
GGA
[ENA]
¡û
>W1511501509
JXBX01000005
Actinomycetota
Bifidobacterium coryneforme Bma6 [JXBX]
41239
41152
-
Ser
GGA
[ENA]
¡û
>W1511505365
JXJS01000005
Actinomycetota
Bifidobacterium asteroides Hma3 [JXJS]
154232
154145
-
Ser
GGA
[ENA]
¡û
>W11141924
AEON01000002
Actinomycetota
Parascardovia denticolens DSM 10105 [AEON]
214577
214662
+
Ser
GGA
[ENA]
¡û
>W1610068757
BCRO01000073
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
64461
64376
-
Ser
GGA
[ENA]
¡û
>W121023137
AGZS01000006
Actinomycetota
Scardovia wiggsiae F0424 [AGZS]
325630
325545
-
Ser
GGA
[ENA]
¡û
>W121077643
AKCI01000001
Actinomycetota
Scardovia wiggsiae F0424 [AKCI]
101360
101275
-
Ser
GGA
[ENA]
¡û
>W121084548
AKII01000002
Actinomycetota
Parascardovia denticolens IPLA 20019 [AKII]
205221
205308
+
Ser
GGA
[ENA]
¡û
>C131003040
CP003325
Actinomycetota
Bifidobacterium asteroides PRL2011 [CP003325]
356873
356786
-
Ser
GGA
[Ensembl]
¡û
>W1610518961
JDTU01000019
Actinomycetota
Bifidobacterium asteroides DSM 20089 [JDTU]
70215
70302
+
Ser
GGA
[ENA]
¡û
>W1610519428
JDUE01000004
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [JDUE]
9895
9808
-
Ser
GGA
[ENA]
¡û
>W1610519461
JDUF01000007
Actinomycetota
Bifidobacterium coryneforme DSM 20216 [JDUF]
14691
14604
-
Ser
GGA
[ENA]
¡û
>W1710066130
BCRO01000073
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
64461
64376
-
Ser
GGA
[ENA]
¡û
>W1710614416
JDTU01000019
Actinomycetota
Bifidobacterium asteroides DSM 20089 [JDTU]
70215
70302
+
Ser
GGA
[ENA]
¡û
>W1710614883
JDUE01000004
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [JDUE]
9895
9808
-
Ser
GGA
[ENA]
¡û
>W1710614916
JDUF01000007
Actinomycetota
Bifidobacterium coryneforme DSM 20216 [JDUF]
14691
14604
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK