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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.471312 (22 seq.)
>W1710861560
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1686882
1686807
-
Ala
TGC
[ENA]
¡û
>C171094896
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
428709
428784
+
Ala
TGC
-
¡û
>C171094933
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
3440457
3440382
-
Ala
TGC
-
¡û
>C171094937
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2667770
2667695
-
Ala
TGC
-
¡û
>C171094939
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2471205
2471130
-
Ala
TGC
-
¡û
>C171094946
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2140742
2140667
-
Ala
TGC
-
¡û
>C171116301
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2765283
2765208
-
Ala
TGC
-
¡û
>C171116303
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2707757
2707682
-
Ala
TGC
-
¡û
>C171116314
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2000628
2000553
-
Ala
TGC
-
¡û
>WENV180284335
OBID01030561
[OBID] metagenome; sludge
403
478
+
Ala
TGC
[ENA]
¢þ
>WENV181371343
OFQV01000883
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
3243
3168
-
Ala
TGC
[ENA]
¢þ
>WENV181378349
OFRB01001094
[OFRB] wastewater metagenome; Exp Tend CN 0WW
2798
2873
+
Ala
TGC
[ENA]
¢þ
>WENV181378826
OFRC01000862
[OFRC] wastewater metagenome; Exp Tend CN 10WW
796
871
+
Ala
TGC
[ENA]
¢þ
>WENV181381662
OFRF01001306
[OFRF] wastewater metagenome; Exp Tend CN 50WW
2239
2164
-
Ala
TGC
[ENA]
¢þ
>WENV181835056
OGVH01005851
[OGVH] freshwater metagenome; freshwater
96
171
+
Ala
TGC
[ENA]
¢þ
>WENV181844488
OGVW01004492
[OGVW] freshwater metagenome; freshwater
1682
1607
-
Ala
TGC
[ENA]
¢þ
>WENV183689418
ORMF011435395
[ORMF] groundwater metagenome; groundwater
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV170708263
LNAP01064174
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
310
385
+
Ala
TGC
[ENA]
¢þ
>WENV170961917
MLJW01006657
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
394
469
+
Ala
TGC
[ENA]
¢þ
>W1910128308
BHGL01000031
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
161
86
-
Ala
TGC
[ENA]
¡û
>W1810659772
QJKI01000043
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
3375
3300
-
Ala
TGC
[ENA]
¡û
>W1610723906
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1686882
1686807
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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