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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47140 (90 seq.)
>W1710815981
LKKS01000102
Gammaproteobacteria
Pseudomonas putida [LKKS]
77978
78065
+
Ser
TGA
[ENA]
¡û
>W1711340326
MCBJ01000011
Gammaproteobacteria
Pseudomonas putida [MCBJ]
1338809
1338722
-
Ser
TGA
[ENA]
¡û
>W1711958561
NBWB01000040
Gammaproteobacteria
Pseudomonas putida [NBWB]
37544
37457
-
Ser
TGA
[ENA]
¡û
>W1712004826
NEHD01000001
Gammaproteobacteria
Pseudomonas sp. R9(2017) [NEHD]
315548
315461
-
Ser
TGA
[ENA]
¡û
>W1712006001
NEHW01000002
Gammaproteobacteria
Pseudomonas sp. R28(2017) [NEHW]
353436
353523
+
Ser
TGA
[ENA]
¡û
>W1712006595
NEIG01000002
Gammaproteobacteria
Pseudomonas sp. R17(2017) [NEIG]
353436
353523
+
Ser
TGA
[ENA]
¡û
>W1712007100
NEIO01000008
Gammaproteobacteria
Pseudomonas sp. B8(2017) [NEIO]
216905
216992
+
Ser
TGA
[ENA]
¡û
>W1712009213
NEJW01000008
Gammaproteobacteria
Pseudomonas sp. B12(2017) [NEJW]
213672
213759
+
Ser
TGA
[ENA]
¡û
>W1712096800
NIBE01000142
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
13964
14051
+
Ser
TGA
[ENA]
¡û
>w021728
AAVY01000010
Gammaproteobacteria
Pseudomonas putida W619 [AAVY]
156083
155994
-
Ser
TGA
[ENA]
¡û
>WENV181190819
OEPS010003748
[OEPS] soil metagenome; soil
3171
3084
-
Ser
TGA
[ENA]
¢þ
>W141143675
AWSQ01000004
Gammaproteobacteria
Pseudomonas taeanensis MS-3 [AWSQ]
543563
543476
-
Ser
TGA
[ENA]
¡û
>W141170265
AXXQ01000003
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I4 [AXXQ]
315893
315980
+
Ser
TGA
[ENA]
¡û
>W141237006
BBIU01000017
Gammaproteobacteria
Pseudomonas parafulva NBRC 16636 [BBIU]
208284
208197
-
Ser
TGA
[ENA]
¡û
>C08007787
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
3997052
3996968
-
Ser
TGA
[Ensembl]
¡û
>WENV183727670
PJTP01000077
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
54123
54036
-
Ser
TGA
[ENA]
¢þ
>WENV170022478
BCQK01013257
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
948
1035
+
Ser
TGA
[ENA]
¢þ
>W141427217
JENF01000110
Gammaproteobacteria
Pseudomonas monteilii [JENF]
16440
16353
-
Ser
TGA
[ENA]
¡û
>WENV170706201
LNAP01001650
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
22835
22748
-
Ser
TGA
[ENA]
¢þ
>C181094160
CP024085
Gammaproteobacteria
Pseudomonas putida E41 [CP024085]
3972111
3972024
-
Ser
TGA
-
¡û
>C181137371
CP026675
Gammaproteobacteria
Pseudomonas sp. SWI36 [CP026675]
251629
251542
-
Ser
TGA
-
¡û
>C191020525
CP022561
Gammaproteobacteria
Pseudomonas putida B4 [CP022561]
2124264
2124351
+
Ser
TGA
-
¡û
>W09104207
AALM01000016
Gammaproteobacteria
Pseudomonas putida F1 [AALM]
62771
62684
-
Ser
TGA
[ENA]
¡û
>C191123342
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
3550128
3550041
-
Ser
TGA
-
¡û
>C191147636
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
2425255
2425342
+
Ser
TGA
-
¡û
>C191204952
LR134299
Gammaproteobacteria
Pseudomonas putida NCTC13186 [LR134299]
2158231
2158318
+
Ser
TGA
-
¡û
>W141561920
JHYV01000009
Gammaproteobacteria
Pseudomonas monteilii NBRC 103158 = DSM 14164 [JHYV]
248672
248759
+
Ser
TGA
[ENA]
¡û
>C141011272
CP006978
Gammaproteobacteria
Pseudomonas monteilii SB3078 [CP006978]
3388946
3388859
-
Ser
TGA
[Ensembl]
¡û
>W1910504798
FYDS01000003
Gammaproteobacteria
Pseudomonas sp. Irchel 3F3 [FYDS]
337152
337065
-
Ser
TGA
[ENA]
¡û
>W1910747812
MINE01000015
Gammaproteobacteria
Pseudomonas putida KT-90 [MINE]
899533
899620
+
Ser
TGA
[ENA]
¡û
>W1910766202
MOAM01000035
Gammaproteobacteria
Pseudomonas vranovensis 15D11 [MOAM]
114754
114841
+
Ser
TGA
[ENA]
¡û
>W1911071656
NMQV01000022
Gammaproteobacteria
Pseudomonas fluvialis ASS-1 [NMQV]
37524
37611
+
Ser
TGA
[ENA]
¡û
>W1911284194
NTME01000016
Gammaproteobacteria
Pseudomonas plecoglossicida DJ-1 [NTME]
67690
67777
+
Ser
TGA
[ENA]
¡û
>W1911492398
OBDW01000002
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I7 [OBDW]
452047
451960
-
Ser
TGA
[ENA]
¡û
>W1911493286
OBEM01000001
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
1040476
1040563
+
Ser
TGA
[ENA]
¡û
>W1911496439
OCMQ01000001
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I9 [OCMQ]
906583
906670
+
Ser
TGA
[ENA]
¡û
>W1911565413
PCOA01000012
Gammaproteobacteria
Pseudomonas sp. MYb187 [PCOA]
103606
103519
-
Ser
TGA
[ENA]
¡û
>W1911586985
PJQP01000016
Gammaproteobacteria
Pseudomonas sp. FFUP_PS_41 [PJQP]
123269
123356
+
Ser
TGA
[ENA]
¡û
>W1911680690
QJKG01000001
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I1 [QJKG]
240872
240785
-
Ser
TGA
[ENA]
¡û
>W1911680931
QJRG01000047
Gammaproteobacteria
Pseudomonas alkylphenolica xwS2 [QJRG]
522445
522532
+
Ser
TGA
[ENA]
¡û
>W1911722477
QRAW01000005
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I3 [QRAW]
154540
154627
+
Ser
TGA
[ENA]
¡û
>W1810084593
PESJ01000003
Gammaproteobacteria
Pseudomonas sp. MR 02 [PESJ]
149264
149177
-
Ser
TGA
[ENA]
¡û
>W1810154117
PIYS01000014
Gammaproteobacteria
Pseudomonas pharmacofabricae ZYSR67-Z [PIYS]
173825
173912
+
Ser
TGA
[ENA]
¡û
>W1810158079
PJCJ01000005
Gammaproteobacteria
Pseudomonas plecoglossicida MR69 [PJCJ]
149360
149273
-
Ser
TGA
[ENA]
¡û
>W1810158133
PJCK01000001
Gammaproteobacteria
Pseudomonas plecoglossicida MR70 [PJCK]
246908
246995
+
Ser
TGA
[ENA]
¡û
>W1810158193
PJCL01000001
Gammaproteobacteria
Pseudomonas plecoglossicida MR134 [PJCL]
423552
423465
-
Ser
TGA
[ENA]
¡û
>W1810176588
PJQC01000223
Gammaproteobacteria
Pseudomonas sp. S06B 330 [PJQC]
125112
125199
+
Ser
TGA
[ENA]
¡û
>W1810239440
PPSJ01000001
Gammaproteobacteria
Pseudomonas sp. FW305-E2 [PPSJ]
179362
179449
+
Ser
TGA
[ENA]
¡û
>W1810368277
PVZN01000014
Gammaproteobacteria
Pseudomonas sp. BBP2017 [PVZN]
106912
106999
+
Ser
TGA
[ENA]
¡û
>W1810579330
QEQL01000001
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
442103
442016
-
Ser
TGA
[ENA]
¡û
>W1810579552
QEQP01000001
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
53503
53416
-
Ser
TGA
[ENA]
¡û
>W1810579668
QEQR01000001
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
442104
442017
-
Ser
TGA
[ENA]
¡û
>W1810670099
QJRO01000003
Gammaproteobacteria
Pseudomonas soli LBp-160603 [QJRO]
95924
95837
-
Ser
TGA
[ENA]
¡û
>W1810670512
QJRV01000003
Gammaproteobacteria
Pseudomonas fulva 57B-090714 [QJRV]
154212
154299
+
Ser
TGA
[ENA]
¡û
>W1810682890
QKVM01000012
Gammaproteobacteria
Pseudomonas sichuanensis WCHPs060039 [QKVM]
115089
115176
+
Ser
TGA
[ENA]
¡û
>W1810685256
QKZD01000012
Gammaproteobacteria
Pseudomonas sp. 2848 [QKZD]
6091
6178
+
Ser
TGA
[ENA]
¡û
>C151100251
HG322950
Gammaproteobacteria
Pseudomonas knackmussii B13 [HG322950]
3540729
3540642
-
Ser
TGA
[Ensembl]
¡û
>W1510001230
AYRY01000007
Gammaproteobacteria
Pseudomonas putida KG-4 [AYRY]
33812
33899
+
Ser
TGA
[ENA]
¡û
>W1510012074
BBNC01000011
Gammaproteobacteria
Pseudomonas putida YKD221 [BBNC]
112718
112631
-
Ser
TGA
[ENA]
¡û
>W1510012224
BBNE01000073
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBNE]
5966
6053
+
Ser
TGA
[ENA]
¡û
>W1511433304
JUHC01000020
Gammaproteobacteria
Pseudomonas putida PD1 [JUHC]
154439
154352
-
Ser
TGA
[ENA]
¡û
>W1511534802
JYOF01000021
Gammaproteobacteria
Pseudomonas sp. 2(2015) 2[2015] [JYOF]
114856
114943
+
Ser
TGA
[ENA]
¡û
>W1511594870
LBME01000021
Gammaproteobacteria
Pseudomonas putida ATH-43 [LBME]
4029
3942
-
Ser
TGA
[ENA]
¡û
>C161063929
CP013997
Gammaproteobacteria
Pseudomonas monteilii USDA-ARS-USMARC-56711 [CP013997]
2575278
2575365
+
Ser
TGA
[Ensembl]
¡û
>C161071558
CP014343
Gammaproteobacteria
Pseudomonas putida 1A00316 [CP014343]
2124429
2124516
+
Ser
TGA
[Ensembl]
¡û
>C161091888
CP015876
Gammaproteobacteria
Pseudomonas putida SJTE-1 [CP015876]
2067329
2067416
+
Ser
TGA
-
¡û
>W121062760
AJJP01000191
Gammaproteobacteria
Pseudomonas donghuensis HYS [AJJP]
13549
13462
-
Ser
TGA
[ENA]
¡û
>W121085274
AKJC01000149
Gammaproteobacteria
Pseudomonas sp. GM84 [AKJC]
18637
18550
-
Ser
TGA
[ENA]
¡û
>W121119412
ALXA01000052
Gammaproteobacteria
Pseudomonas putida S11 [ALXA]
39624
39711
+
Ser
TGA
[ENA]
¡û
>W1610047193
BBDC01000030
Gammaproteobacteria
Pseudomonas putida JCM 18798 [BBDC]
3553
3640
+
Ser
TGA
[ENA]
¡û
>W1610059152
BCAT01000004
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
2456
2369
-
Ser
TGA
[ENA]
¡û
>W1610059266
BCAV01000050
Gammaproteobacteria
Pseudomonas sp. NBRC 111119 [BCAV]
60352
60439
+
Ser
TGA
[ENA]
¡û
>W1610059685
BCBF01000043
Gammaproteobacteria
Pseudomonas sp. NBRC 111129 [BCBF]
37759
37672
-
Ser
TGA
[ENA]
¡û
>W1610059893
BCBI01000044
Gammaproteobacteria
Pseudomonas sp. NBRC 111132 [BCBI]
32598
32511
-
Ser
TGA
[ENA]
¡û
>C131016605
CP005976
Gammaproteobacteria
Pseudomonas putida H8234 [CP005976]
4665242
4665155
-
Ser
TGA
[Ensembl]
¡û
>W1610680078
LKKS01000102
Gammaproteobacteria
Pseudomonas putida [LKKS]
77978
78065
+
Ser
TGA
[ENA]
¡û
>W1611067445
MCBJ01000011
Gammaproteobacteria
Pseudomonas putida [MCBJ]
1338809
1338722
-
Ser
TGA
[ENA]
¡û
>W1710043798
BBDC01000030
Gammaproteobacteria
Pseudomonas putida JCM 18798 [BBDC]
3553
3640
+
Ser
TGA
[ENA]
¡û
>W1710055868
BCAP01000033
Gammaproteobacteria
Pseudomonas monteilii [BCAP]
32089
32002
-
Ser
TGA
[ENA]
¡û
>W1710056099
BCAT01000004
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
2456
2369
-
Ser
TGA
[ENA]
¡û
>W1710056213
BCAV01000050
Gammaproteobacteria
Pseudomonas sp. NBRC 111119 [BCAV]
60352
60439
+
Ser
TGA
[ENA]
¡û
>W1710056808
BCBF01000043
Gammaproteobacteria
Pseudomonas sp. NBRC 111129 [BCBF]
37759
37672
-
Ser
TGA
[ENA]
¡û
>W1710057016
BCBI01000044
Gammaproteobacteria
Pseudomonas sp. NBRC 111132 [BCBI]
32598
32511
-
Ser
TGA
[ENA]
¡û
>W1710057516
BCBR01000002
Gammaproteobacteria
Pseudomonas sp. NBRC 111141 [BCBR]
116110
116023
-
Ser
TGA
[ENA]
¡û
>W1710542483
FNZE01000013
Gammaproteobacteria
Pseudomonas linyingensis [FNZE]
105420
105507
+
Ser
TGA
[ENA]
¡û
>W1710549599
FOEQ01000002
Gammaproteobacteria
Pseudomonas soli [FOEQ]
78349
78262
-
Ser
TGA
[ENA]
¡û
>W1710572765
FOWX01000033
Gammaproteobacteria
Pseudomonas borbori [FOWX]
33905
33992
+
Ser
TGA
[ENA]
¡û
>W1710573434
FOXM01000006
Gammaproteobacteria
Pseudomonas sagittaria [FOXM]
111059
111146
+
Ser
TGA
[ENA]
¡û
>W1710606205
FWXQ01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I5 [FWXQ]
256603
256690
+
Ser
TGA
[ENA]
¡û
>W1710607498
FXAD01000001
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I5 [FXAD]
168559
168472
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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