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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47161 (101 seq.)
>W1710923788
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
34112
34024
-
Ser
TGA
[ENA]
¡û
>W1711069872
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
88371
88459
+
Ser
TGA
[ENA]
¡û
>W1711069911
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1844337
1844425
+
Ser
TGA
[ENA]
¡û
>W1711069932
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1846174
1846262
+
Ser
TGA
[ENA]
¡û
>W1711312262
MASS01000046
Bacillota
Desulfosporosinus sp. BG [MASS]
1061
1149
+
Ser
TGA
[ENA]
¡û
>W1711926285
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121805
121717
-
Ser
TGA
[ENA]
¡û
>W1711932767
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
183927
184015
+
Ser
TGA
[ENA]
¡û
>W131003157
AHAF01000003
Bacillota
Veillonella seminalis ACS-216-V-Col6b [AHAF]
205851
205939
+
Ser
TGA
[ENA]
¡û
>W131162711
AQZD01000007
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
146785
146697
-
Ser
TGA
[ENA]
¡û
>W131162803
AQZF01000001
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
11244
11332
+
Ser
TGA
[ENA]
¡û
>W131164704
ARAZ01000038
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
42624
42536
-
Ser
TGA
[ENA]
¡û
>C007767
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
10747
10835
+
Ser
TGA
[Ensembl]
¡û
>WENV180153142
OAUR01002447
[OAUR] human gut metagenome; faeces
126
38
-
Ser
TGA
[ENA]
¢þ
>WENV180168397
OAVR01000002
[OAVR] human gut metagenome; faeces
90
2
-
Ser
TGA
[ENA]
¢þ
>w002156
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
567808
567718
-
Ser
TGA
[ENA]
¡û
>WENV180432024
OBWI01000145
[OBWI] human gut metagenome; faeces
25079
24991
-
Ser
TGA
[ENA]
¢þ
>WENV180448302
OBXE01007803
[OBXE] human gut metagenome; faeces
153
65
-
Ser
TGA
[ENA]
¢þ
>WENV180465098
OBYE01000663
[OBYE] human gut metagenome; faeces
3305
3217
-
Ser
TGA
[ENA]
¢þ
>WENV180493232
OBZY01002531
[OBZY] human gut metagenome; faeces
24
112
+
Ser
TGA
[ENA]
¢þ
>WENV180551617
OCJG01003273
[OCJG] human oral metagenome; human oral
443
355
-
Ser
TGA
[ENA]
¢þ
>WENV180783504
ODIQ01008606
[ODIQ] human metagenome; G_DNA_Tongue dorsum
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV180820117
ODJR01001973
[ODJR] human metagenome; G_DNA_Tongue dorsum
3693
3781
+
Ser
TGA
[ENA]
¢þ
>WENV180820156
ODJR01002415
[ODJR] human metagenome; G_DNA_Tongue dorsum
2177
2089
-
Ser
TGA
[ENA]
¢þ
>WENV180830077
ODKB01000326
[ODKB] human metagenome; G_DNA_Tongue dorsum
386
474
+
Ser
TGA
[ENA]
¢þ
>WENV180830995
ODKB01025074
[ODKB] human metagenome; G_DNA_Tongue dorsum
135
47
-
Ser
TGA
[ENA]
¢þ
>WENV180831012
ODKB01027892
[ODKB] human metagenome; G_DNA_Tongue dorsum
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV180831084
ODKB01037386
[ODKB] human metagenome; G_DNA_Tongue dorsum
489
401
-
Ser
TGA
[ENA]
¢þ
>WENV180831162
ODKB01047824
[ODKB] human metagenome; G_DNA_Tongue dorsum
335
247
-
Ser
TGA
[ENA]
¢þ
>WENV180842264
ODKM01004410
[ODKM] human metagenome; G_DNA_Buccal mucosa
551
463
-
Ser
TGA
[ENA]
¢þ
>WENV180897368
ODNI01018848
[ODNI] human metagenome; G_DNA_Tongue dorsum
717
805
+
Ser
TGA
[ENA]
¢þ
>WENV180897491
ODNI01030230
[ODNI] human metagenome; G_DNA_Tongue dorsum
466
554
+
Ser
TGA
[ENA]
¢þ
>WENV180897699
ODNI01059429
[ODNI] human metagenome; G_DNA_Tongue dorsum
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV180987036
ODVK01003588
[ODVK] human metagenome; G_DNA_Supragingival plaque
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV181006369
ODWA01013956
[ODWA] human metagenome; G_DNA_Buccal mucosa
1235
1323
+
Ser
TGA
[ENA]
¢þ
>WENV181027623
ODXD01017166
[ODXD] human metagenome; G_DNA_Buccal mucosa
168
256
+
Ser
TGA
[ENA]
¢þ
>WENV181073750
OEAO01000968
[OEAO] human metagenome; G_DNA_Tongue dorsum
1901
1989
+
Ser
TGA
[ENA]
¢þ
>WENV181074210
OEAO01004495
[OEAO] human metagenome; G_DNA_Tongue dorsum
1042
1130
+
Ser
TGA
[ENA]
¢þ
>WENV181074423
OEAO01008052
[OEAO] human metagenome; G_DNA_Tongue dorsum
2976
2888
-
Ser
TGA
[ENA]
¢þ
>WENV181074449
OEAO01008455
[OEAO] human metagenome; G_DNA_Tongue dorsum
3555
3643
+
Ser
TGA
[ENA]
¢þ
>WENV181074503
OEAO01010354
[OEAO] human metagenome; G_DNA_Tongue dorsum
2648
2560
-
Ser
TGA
[ENA]
¢þ
>WENV181085402
OEAX01008023
[OEAX] human metagenome; G_DNA_Tongue dorsum
797
885
+
Ser
TGA
[ENA]
¢þ
>WENV181085535
OEAX01016993
[OEAX] human metagenome; G_DNA_Tongue dorsum
383
295
-
Ser
TGA
[ENA]
¢þ
>WENV181111943
OEEL01000042
[OEEL] human metagenome; G_DNA_Tongue dorsum
72675
72763
+
Ser
TGA
[ENA]
¢þ
>WENV181112527
OEEL01001184
[OEEL] human metagenome; G_DNA_Tongue dorsum
100
12
-
Ser
TGA
[ENA]
¢þ
>WENV181158717
OEIH01007157
[OEIH] human metagenome; G_DNA_Supragingival plaque
144
56
-
Ser
TGA
[ENA]
¢þ
>WENV181187136
OENY01000061
[OENY] human gut metagenome; human gut
39301
39213
-
Ser
TGA
[ENA]
¢þ
>WENV181328290
OFLT01000023
[OFLT] metagenome; faeces
16947
16859
-
Ser
TGA
[ENA]
¢þ
>WENV181487847
OGFP01004023
[OGFP] metagenome; Human gut stool
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV181515471
OGGW01004153
[OGGW] metagenome; Human gut stool
5323
5411
+
Ser
TGA
[ENA]
¢þ
>WENV181538555
OGHY01021349
[OGHY] metagenome; Human gut stool
1057
1145
+
Ser
TGA
[ENA]
¢þ
>WENV181561277
OGJD01000767
[OGJD] metagenome; Human gut stool
13809
13721
-
Ser
TGA
[ENA]
¢þ
>WENV181746863
OGQN01005163
[OGQN] human gut metagenome; faeces
7352
7440
+
Ser
TGA
[ENA]
¢þ
>WENV181817789
OGTO01000152
[OGTO] human gut metagenome; fecal sample 4 from infant 1
1190
1102
-
Ser
TGA
[ENA]
¢þ
>WENV181935095
OGYU01000894
[OGYU] human gut metagenome; faeces
6558
6646
+
Ser
TGA
[ENA]
¢þ
>WENV181935764
OGYU01016943
[OGYU] human gut metagenome; faeces
556
644
+
Ser
TGA
[ENA]
¢þ
>WENV181935805
OGYU01022323
[OGYU] human gut metagenome; faeces
795
707
-
Ser
TGA
[ENA]
¢þ
>WENV181960257
OGZN01033302
[OGZN] human gut metagenome; faeces
3
91
+
Ser
TGA
[ENA]
¢þ
>WENV181988558
OHAN01043950
[OHAN] human gut metagenome; faeces
72
160
+
Ser
TGA
[ENA]
¢þ
>WENV182000231
OHAX01004755
[OHAX] human gut metagenome; faeces
1505
1417
-
Ser
TGA
[ENA]
¢þ
>WENV182403407
OIET01004508
[OIET] human gut metagenome; human gut
1167
1255
+
Ser
TGA
[ENA]
¢þ
>WENV182423005
OIGY01003775
[OIGY] human gut metagenome; human gut
477
565
+
Ser
TGA
[ENA]
¢þ
>WENV182427136
OIHT01002790
[OIHT] human gut metagenome; human gut
542
454
-
Ser
TGA
[ENA]
¢þ
>WENV182444102
OIKQ01004784
[OIKQ] human gut metagenome; human gut
463
375
-
Ser
TGA
[ENA]
¢þ
>WENV182475082
OIPY01001315
[OIPY] human gut metagenome; human gut
650
562
-
Ser
TGA
[ENA]
¢þ
>WENV182476062
OIQE01001553
[OIQE] human gut metagenome; human gut
229
141
-
Ser
TGA
[ENA]
¢þ
>WENV182803425
OJUL01000337
[OJUL] human gut metagenome; human gut
3834
3922
+
Ser
TGA
[ENA]
¢þ
>WENV182822307
OKBG01000105
[OKBG] human gut metagenome; human gut
35885
35973
+
Ser
TGA
[ENA]
¢þ
>WENV182826943
OKCW01000250
[OKCW] human gut metagenome; human gut
5591
5503
-
Ser
TGA
[ENA]
¢þ
>WENV182840583
OKHN01000004
[OKHN] human gut metagenome; human gut
206557
206645
+
Ser
TGA
[ENA]
¢þ
>WENV182848156
OKKG01000001
[OKKG] human gut metagenome; human gut
107837
107925
+
Ser
TGA
[ENA]
¢þ
>WENV182850704
OKLF01000080
[OKLF] human gut metagenome; human gut
15126
15214
+
Ser
TGA
[ENA]
¢þ
>WENV182857944
OKOB01000388
[OKOB] human gut metagenome; human gut
381
293
-
Ser
TGA
[ENA]
¢þ
>W141288718
JAPX01000015
Bacillota
Veillonella sp. ICM51a [JAPX]
33619
33707
+
Ser
TGA
[ENA]
¡û
>WENV182944102
OKVI01004152
[OKVI] human gut metagenome; human gut
2638
2726
+
Ser
TGA
[ENA]
¢þ
>WENV183061671
OLIA01001302
[OLIA] metagenome; faeces
553
641
+
Ser
TGA
[ENA]
¢þ
>WENV183166701
OLOY01000628
[OLOY] human gut metagenome; faeces
222
134
-
Ser
TGA
[ENA]
¢þ
>WENV183237486
OLQY01000519
[OLQY] human gut metagenome; faeces
2864
2776
-
Ser
TGA
[ENA]
¢þ
>WENV183662727
ORJL010219699
[ORJL] groundwater metagenome; groundwater
2577
2489
-
Ser
TGA
[ENA]
¢þ
>WENV170662038
JXWV01181126
[JXWV] soil metagenome; rice field; organic FYM Plot
65
153
+
Ser
TGA
[ENA]
¢þ
>C09103962
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
10845
10933
+
Ser
TGA
[Ensembl]
¡û
>C151016294
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
12268
12356
+
Ser
TGA
[Ensembl]
¡û
>W1511187139
JMGA01000060
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
830
918
+
Ser
AGA
[ENA]
¡û
>W1511645992
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70566
70478
-
Ser
TGA
[ENA]
¡û
>W11177274
AGAF01000180
Bacillota
Desulfosporosinus sp. OT [AGAF]
1049
1137
+
Ser
TGA
[ENA]
¡û
>W11181357
AGJA01000014
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
733
821
+
Ser
AGA
[ENA]
¡û
>W11181407
AGJB01000010
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
79642
79554
-
Ser
TGA
[ENA]
¡û
>C121014797
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1636480
1636568
+
Ser
AGA
[Ensembl]
¡û
>C121014887
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952717
2952629
-
Ser
TGA
[Ensembl]
¡û
>W121007280
AFZX01000105
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
54510
54422
-
Ser
TGA
[ENA]
¡û
>W121010463
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133868
133780
-
Ser
TGA
[ENA]
¡û
>W121010522
AGJH01000008
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
37891
37979
+
Ser
TGA
[ENA]
¡û
>W121036157
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1926005
1925917
-
Ser
TGA
[ENA]
¡û
>C131003211
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
11294
11382
+
Ser
TGA
[Ensembl]
¡û
>W1610781389
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
34112
34024
-
Ser
TGA
[ENA]
¡û
>W1610910400
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
88371
88459
+
Ser
TGA
[ENA]
¡û
>W1610910439
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1844337
1844425
+
Ser
TGA
[ENA]
¡û
>W1610910460
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1846174
1846262
+
Ser
TGA
[ENA]
¡û
>W1710593509
FRDN01000006
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
318634
318722
+
Ser
TGA
[ENA]
¡û
>W1710604166
FUZT01000001
Bacillota
Maledivibacter halophilus [FUZT]
222411
222499
+
Ser
TGA
[ENA]
¡û
>W1710604194
FUZT01000025
Bacillota
Maledivibacter halophilus [FUZT]
112
200
+
Ser
TGA
[ENA]
¡û
>W1710604208
FUZT01000029
Bacillota
Maledivibacter halophilus [FUZT]
4508
4420
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK