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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4717 (50 seq.)
>W1710802946
LJYE01000110
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
149653
149746
+
Ser
GCT
[ENA]
¡û
>W1710891430
LNCU01000115
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
102956
102863
-
Ser
GCT
[ENA]
¡û
>W1711129632
LUUB01000125
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
212848
212755
-
Ser
GCT
[ENA]
¡û
>W1711505996
MKWA01000003
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
260994
260901
-
Ser
GCT
[ENA]
¡û
>W1711636759
MPVQ01000087
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
5795
5888
+
Ser
GCT
[ENA]
¡û
>W1711928930
NAFL01000184
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
1359
1266
-
Ser
GCT
[ENA]
¡û
>C171064675
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4937388
4937481
+
Ser
GCT
-
¡û
>W131227243
AUEZ01000065
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
18735
18828
+
Ser
GCT
[ENA]
¡û
>W131227279
AUFA01000012
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
160386
160479
+
Ser
GCT
[ENA]
¡û
>W131228549
AUGA01000017
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
71317
71224
-
Ser
GCT
[ENA]
¡û
>WENV180105084
OAPD01004276
[OAPD] marine metagenome; 2010
392
485
+
Ser
GCT
[ENA]
¢þ
>WENV180398034
OBPZ01058894
[OBPZ] marine metagenome; ENVO:00002010
278
371
+
Ser
GCT
[ENA]
¢þ
>w001308
AAAF01000014
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
775184
775279
+
Ser
GCT
[ENA]
¡û
>W141150052
AXAB01000046
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
27917
27824
-
Ser
GCT
[ENA]
¡û
>W141150258
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
507918
508011
+
Ser
GCT
[ENA]
¡û
>W141150732
AXAP01000046
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
32549
32642
+
Ser
GCT
[ENA]
¡û
>W141150989
AXAS01000012
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
117360
117267
-
Ser
GCT
[ENA]
¡û
>W141151142
AXAV01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
9177
9084
-
Ser
GCT
[ENA]
¡û
>W141169203
AXVP01000053
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
35666
35573
-
Ser
GCT
[ENA]
¡û
>W141278112
JAFC01000019
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
98736
98829
+
Ser
GCT
[ENA]
¡û
>WENV171003299
NNBT01003775
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1608
1515
-
Ser
GCT
[ENA]
¢þ
>C191019735
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4457542
4457635
+
Ser
GCT
-
¡û
>W1910183071
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
165446
165353
-
Ser
GCT
[ENA]
¡û
>W1910599009
LBJM01000089
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
76059
76152
+
Ser
GCT
[ENA]
¡û
>W1911629498
PSRR01000073
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
30127
30220
+
Ser
GCT
[ENA]
¡û
>W1911629568
PSRS01000154
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
4434
4341
-
Ser
GCT
[ENA]
¡û
>W1911629597
PSRT01000051
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
4711
4618
-
Ser
GCT
[ENA]
¡û
>C151066539
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4734185
4734278
+
Ser
GCT
[Ensembl]
¡û
>W1510973726
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
313938
314031
+
Ser
GCT
[ENA]
¡û
>W1511353644
JRPN01000028
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
254386
254479
+
Ser
GCT
[ENA]
¡û
>W1511533378
JYMT01000042
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
937820
937913
+
Ser
GCT
[ENA]
¡û
>W1511533422
JYMU01000043
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
102838
102745
-
Ser
GCT
[ENA]
¡û
>W1511625957
LCZM01000258
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
14792
14699
-
Ser
GCT
[ENA]
¡û
>C121000469
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4711092
4711185
+
Ser
GCT
[Ensembl]
¡û
>C161017377
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1708081
1708174
+
Ser
GCT
[Ensembl]
¡û
>C161107925
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4501632
4501725
+
Ser
GCT
-
¡û
>W121065208
AJPV01000276
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
2585
2492
-
Ser
GCT
[ENA]
¡û
>W121065319
AJPX01000678
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
2525
2432
-
Ser
GCT
[ENA]
¡û
>W121065361
AJPY01000617
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
1123
1030
-
Ser
GCT
[ENA]
¡û
>W121065400
AJPZ01000332
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
4733
4640
-
Ser
GCT
[ENA]
¡û
>W121065504
AJQB01000603
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
1626
1533
-
Ser
GCT
[ENA]
¡û
>W1610666803
LJYE01000110
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
149653
149746
+
Ser
GCT
[ENA]
¡û
>W1610751795
LNCU01000115
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
102956
102863
-
Ser
GCT
[ENA]
¡û
>W1610940705
LUUB01000125
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
212848
212755
-
Ser
GCT
[ENA]
¡û
>W1710513031
FMZW01000001
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
348304
348397
+
Ser
GCT
[ENA]
¡û
>W1710516784
FNCU01000049
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
50964
51057
+
Ser
GCT
[ENA]
¡û
>W1710536569
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
1254233
1254326
+
Ser
GCT
[ENA]
¡û
>W1710564293
FOQJ01000020
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
27560
27467
-
Ser
GCT
[ENA]
¡û
>W1710735650
LGHL01000118
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
35839
35932
+
Ser
GCT
[ENA]
¡û
>W1710735690
LGHM01000075
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
45047
45140
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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