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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47189 (9 seq.)
>A171000030
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1100932
1100848
-
Leu
GAG
-
¡û
>A171004179
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2017773
2017857
+
Leu
GAG
-
¡û
>A171004400
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1374156
1374240
+
Leu
GAG
-
¡û
>A171006158
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1374498
1374582
+
Leu
GAG
-
¡û
>WENV170008668
APHM01000098
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
870
954
+
Leu
GAG
[ENA]
¢þ
>At0829
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1107813
1107729
-
Leu
GAG
[Ensembl]
¡û
>W1910230024
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
2668049
2667965
-
Leu
GAG
[ENA]
¡û
>W1610004184
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1340707
1340623
-
Leu
GAG
[ENA]
¡û
>W1610061863
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1672107
1672191
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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