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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47190 (37 seq.)
>A171004543
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1398332
1398247
-
Leu
GAG
-
¡û
>A171004544
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1398116
1398029
-
Leu
GAG
-
¡û
>A171004558
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
139141
139056
-
Leu
CAG
-
¡û
>A171004593
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2670150
2670235
+
Leu
GAG
-
¡û
>A171004594
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2670366
2670453
+
Leu
GAG
-
¡û
>A171004705
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
795418
795331
-
Leu
GAG
-
¡û
>A171004706
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
795213
795128
-
Leu
GAG
-
¡û
>A171005148
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2347860
2347947
+
Leu
GAG
-
¡û
>A171005267
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
3914507
3914420
-
Leu
GAG
-
¡û
>WENV180345634
OBLN01001325
[OBLN] sediment metagenome; sediment
4205
4292
+
Leu
GAG
[ENA]
¢þ
>WENV180345635
OBLN01001325
[OBLN] sediment metagenome; sediment
4386
4471
+
Leu
GAG
[ENA]
¢þ
>WENV183512323
OMKS01000269
[OMKS] sediment metagenome; hot spring sediment
40756
40840
+
Leu
GAG
[ENA]
¢þ
>WENV170007993
AMZC01000011
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
246
159
-
Leu
GAG
[ENA]
¢þ
>WENV170644757
JMBW01082670
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
170
257
+
Leu
CAG
[ENA]
¢þ
>WENV170689144
LFRM01279166
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24181
24094
-
Leu
GAG
[ENA]
¢þ
>WENV170689145
LFRM01279166
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23965
23878
-
Leu
GAG
[ENA]
¢þ
>WENV170690025
LFRM01322134
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
136117
136204
+
Leu
CAG
[ENA]
¢þ
>W1910211685
FMID01000041
Euryarchaeota
Methanoculleus chikugoensis [FMID]
20698
20784
+
Leu
GAG
[ENA]
¡û
>W1910230876
FPAO01000002
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
66400
66485
+
Leu
GAG
[ENA]
¡û
>W1910230877
FPAO01000002
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
66616
66703
+
Leu
GAG
[ENA]
¡û
>W1910230899
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
302220
302305
+
Leu
CAG
[ENA]
¡û
>W1910569448
JJOV01000056
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
40840
40753
-
Leu
GAG
[ENA]
¡û
>W1910569449
JJOV01000056
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
40640
40555
-
Leu
GAG
[ENA]
¡û
>W1910569962
JJPF01000065
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
76979
77066
+
Leu
GAG
[ENA]
¡û
>W1910570042
JJPH01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
76979
77066
+
Leu
GAG
[ENA]
¡û
>W1910570134
JJPI01000124
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
63064
63151
+
Leu
GAG
[ENA]
¡û
>W1910570221
JJPK01000065
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
466
379
-
Leu
GAG
[ENA]
¡û
>W1910571067
JJQB01000036
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
467
380
-
Leu
GAG
[ENA]
¡û
>W1910571135
JJQC01000112
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
467
380
-
Leu
GAG
[ENA]
¡û
>W1910571162
JJQD01000052
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
29409
29496
+
Leu
GAG
[ENA]
¡û
>W1610045115
BBBC01000058
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
23989
24076
+
Leu
GAG
[ENA]
¡û
>W1610046887
BBCW01000017
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
75909
75996
+
Leu
GAG
[ENA]
¡û
>W1610046888
BBCW01000017
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
76089
76177
+
Pseudo
GAG
[ENA]
¡û
>W1610605112
LFRP01000030
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
24181
24094
-
Pseudo
GAG
[ENA]
¡û
>W1610605113
LFRP01000030
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
23965
23878
-
Pseudo
GAG
[ENA]
¡û
>W1610605121
LFRP01000037
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
136117
136204
+
Pseudo
CAG
[ENA]
¡û
>W1610670270
LKAZ01000054
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
234192
234104
-
Pseudo
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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