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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.471911 (127 seq.)
>W1710933179
LOIP01000085
Gammaproteobacteria
Escherichia coli [LOIP]
194
119
-
Met
CAT
[ENA]
¡û
>W1710939712
LONT01000023
Gammaproteobacteria
Escherichia coli [LONT]
101549
101624
+
Met
CAT
[ENA]
¡û
>W1711784003
MVOR01000018
Gammaproteobacteria
Escherichia coli [MVOR]
98033
98108
+
Met
CAT
[ENA]
¡û
>W1712001473
NEDM01000027
Gammaproteobacteria
Escherichia coli [NEDM]
268
343
+
Met
CAT
[ENA]
¡û
>W1712012819
NEMX01000034
Gammaproteobacteria
Escherichia coli [NEMX]
32255
32330
+
Met
CAT
[ENA]
¡û
>W1712013425
NENF01000001
Gammaproteobacteria
Escherichia coli [NENF]
7252
7177
-
Met
CAT
[ENA]
¡û
>W1712014418
NENQ01000053
Gammaproteobacteria
Escherichia coli [NENQ]
279
354
+
Met
CAT
[ENA]
¡û
>W1712014852
NENW01000001
Gammaproteobacteria
Escherichia coli [NENW]
7252
7177
-
Met
CAT
[ENA]
¡û
>W1712083138
NHQE01000016
Gammaproteobacteria
Escherichia coli [NHQE]
105253
105328
+
Met
CAT
[ENA]
¡û
>W131037987
AMFM01000041
Gammaproteobacteria
Escherichia coli EC302/04 [AMFM]
6858
6783
-
Met
CAT
[ENA]
¡û
>W131078054
ANWN01000014
Gammaproteobacteria
Escherichia coli KTE147 [ANWN]
32545
32470
-
Met
CAT
[ENA]
¡û
>W131112537
APNY01000002
Gammaproteobacteria
Escherichia coli HM46 [APNY]
65131
65056
-
Met
CAT
[ENA]
¡û
>C171006961
CP010237
Gammaproteobacteria
Escherichia coli S43 [CP010237]
3009757
3009832
+
Met
CAT
-
¡û
>C171073077
CP018103
Gammaproteobacteria
Escherichia coli MRSN352231 [CP018103]
2937575
2937500
-
Met
CAT
-
¡û
>C171073166
CP018109
Gammaproteobacteria
Escherichia coli MRSN346595 [CP018109]
2938647
2938572
-
Met
CAT
-
¡û
>C171073255
CP018115
Gammaproteobacteria
Escherichia coli MRSN346638 [CP018115]
2938647
2938572
-
Met
CAT
-
¡û
>C171073344
CP018121
Gammaproteobacteria
Escherichia coli MRSN346355 [CP018121]
2937575
2937500
-
Met
CAT
-
¡û
>WENV180116717
OAQX01000184
[OAQX] human gut metagenome; ENVO:feces
2871
2946
+
Ile2
CAT
[ENA]
¢þ
>WENV180239097
OBDB01000022
[OBDB] human gut metagenome; human gut
92358
92433
+
Ile2
CAT
[ENA]
¢þ
>WENV180426314
OBVY01022086
[OBVY] human gut metagenome; faeces
89
14
-
Ile2
CAT
[ENA]
¢þ
>W141055266
AONF01000007
Gammaproteobacteria
Escherichia coli EC096/10 [AONF]
32152
32227
+
Met
CAT
[ENA]
¡û
>WENV181518143
OGHA01001692
[OGHA] metagenome; Human gut stool
4302
4377
+
Ile2
CAT
[ENA]
¢þ
>WENV181565393
OGJI01000774
[OGJI] metagenome; Human gut stool
8057
7982
-
Ile2
CAT
[ENA]
¢þ
>WENV181618354
OGMC01000073
[OGMC] metagenome; Human gut stool
32000
32075
+
Ile2
CAT
[ENA]
¢þ
>WENV181638146
OGNC01000218
[OGNC] metagenome; Human gut stool
12798
12723
-
Ile2
CAT
[ENA]
¢þ
>WENV181833476
OGUQ01002500
[OGUQ] metagenome; Human gut stool
7422
7347
-
Ile2
CAT
[ENA]
¢þ
>WENV181949819
OGZF01010785
[OGZF] human gut metagenome; faeces
403
478
+
Ile2
CAT
[ENA]
¢þ
>WENV182539973
OIXV01038672
[OIXV] human gut metagenome; faeces
906
831
-
Ile2
CAT
[ENA]
¢þ
>WENV182604722
OJJP01001969
[OJJP] metagenome; faeces
2022
1947
-
Ile2
CAT
[ENA]
¢þ
>WENV182874490
OKRW01011865
[OKRW] human gut metagenome; faeces
1836
1761
-
Ile2
CAT
[ENA]
¢þ
>WENV182944650
OKVJ01000901
[OKVJ] human gut metagenome; human gut
6101
6176
+
Ile2
CAT
[ENA]
¢þ
>WENV182950322
OKVS01000003
[OKVS] human gut metagenome; human gut
78057
78132
+
Ile2
CAT
[ENA]
¢þ
>WENV182952985
OKVX01001209
[OKVX] human gut metagenome; human gut
6177
6102
-
Ile2
CAT
[ENA]
¢þ
>WENV183218513
OLQJ01000157
[OLQJ] human gut metagenome; faeces
12896
12971
+
Ile2
CAT
[ENA]
¢þ
>WENV183780595
PPYF01172519
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3178
3253
+
Ile2
CAT
[ENA]
¢þ
>WENV183792675
PPYF01462423
[PPYF] human gut metagenome; stool from patient with Crohn's disease
310
235
-
Ile2
CAT
[ENA]
¢þ
>WENV170541110
CXPJ01002381
[CXPJ] human gut metagenome genome assembly hA12, contig; ENVO:feces
437
362
-
Met
CAT
[ENA]
¢þ
>C181080131
CP023386
Gammaproteobacteria
Escherichia coli 1190 [CP023386]
1217323
1217398
+
Met
CAT
-
¡û
>C181159017
CP027701
Gammaproteobacteria
Escherichia coli 675SK2 [CP027701]
3731241
3731166
-
Met
CAT
-
¡û
>C181204366
LS483296
Gammaproteobacteria
Escherichia coli NCTC9966 [LS483296]
1136425
1136500
+
Met
CAT
-
¡û
>C191200721
LR134220
Gammaproteobacteria
Escherichia coli NCTC11121 [LR134220]
1138984
1139059
+
Met
CAT
-
¡û
>C191201314
LR134228
Gammaproteobacteria
Escherichia coli NCTC9699 [LR134228]
1209153
1209228
+
Met
CAT
-
¡û
>W141617340
JJLL01000143
Gammaproteobacteria
Escherichia coli 1-250-04_S4_C2 [JJLL]
35773
35698
-
Met
CAT
[ENA]
¡û
>W141617687
JJLO01000134
Gammaproteobacteria
Escherichia coli 1-250-04_S4_C1 [JJLO]
33536
33461
-
Met
CAT
[ENA]
¡û
>W141745869
JNQP01000038
Gammaproteobacteria
Escherichia coli 2-316-03_S3_C1 [JNQP]
32692
32767
+
Met
CAT
[ENA]
¡û
>W141778546
JONE01000047
Gammaproteobacteria
Escherichia coli 5-366-08_S1_C3 [JONE]
7403
7328
-
Met
CAT
[ENA]
¡û
>W141783312
JOQU01000002
Gammaproteobacteria
Escherichia coli 5-366-08_S1_C1 [JOQU]
308667
308742
+
Met
CAT
[ENA]
¡û
>W141829296
JRGB01000230
Gammaproteobacteria
Escherichia coli [JRGB]
15192
15267
+
Met
CAT
[ENA]
¡û
>W1910082845
BFNO01000110
Gammaproteobacteria
Escherichia coli JML047 [BFNO]
983
908
-
Met
CAT
[ENA]
¡û
>W1910084970
BFOR01000082
Gammaproteobacteria
Escherichia coli JML077 [BFOR]
1141
1066
-
Met
CAT
[ENA]
¡û
>W1910087359
BFPY01000048
Gammaproteobacteria
Escherichia coli JML113 [BFPY]
32527
32452
-
Met
CAT
[ENA]
¡û
>W1910092097
BFSN01000073
Gammaproteobacteria
Escherichia coli JML195 [BFSN]
13297
13372
+
Met
CAT
[ENA]
¡û
>W1910092471
BFST01000008
Gammaproteobacteria
Escherichia coli JML202 [BFST]
32902
32827
-
Met
CAT
[ENA]
¡û
>W1910092827
BFSY01000006
Gammaproteobacteria
Escherichia coli JML208 [BFSY]
65169
65094
-
Met
CAT
[ENA]
¡û
>W1910128215
BHFN01000001
Gammaproteobacteria
Escherichia coli EC12051 [BHFN]
6308
6233
-
Met
CAT
[ENA]
¡û
>W1910141659
BIFM01000010
Gammaproteobacteria
Escherichia coli TUM17824 [BIFM]
91800
91875
+
Met
CAT
[ENA]
¡û
>W1910532771
FZEW01000015
Gammaproteobacteria
Escherichia coli [FZEW]
92468
92543
+
Met
CAT
[ENA]
¡û
>W1910536098
FZGK01000014
Gammaproteobacteria
Escherichia coli [FZGK]
92513
92588
+
Met
CAT
[ENA]
¡û
>W1910536341
FZGN01000008
Gammaproteobacteria
Escherichia coli [FZGN]
97762
97837
+
Met
CAT
[ENA]
¡û
>W1910536756
FZGS01000013
Gammaproteobacteria
Escherichia coli [FZGS]
92449
92524
+
Met
CAT
[ENA]
¡û
>W1910537229
FZGY01000008
Gammaproteobacteria
Escherichia coli [FZGY]
97715
97790
+
Met
CAT
[ENA]
¡û
>W1910537743
FZHE01000014
Gammaproteobacteria
Escherichia coli [FZHE]
92449
92524
+
Met
CAT
[ENA]
¡û
>W1910537904
FZHG01000012
Gammaproteobacteria
Escherichia coli [FZHG]
92367
92442
+
Met
CAT
[ENA]
¡û
>W1910538221
FZHK01000013
Gammaproteobacteria
Escherichia coli [FZHK]
92455
92530
+
Met
CAT
[ENA]
¡û
>W1910538306
FZHL01000012
Gammaproteobacteria
Escherichia coli [FZHL]
92449
92524
+
Met
CAT
[ENA]
¡û
>W1910538459
FZHN01000014
Gammaproteobacteria
Escherichia coli [FZHN]
97761
97836
+
Met
CAT
[ENA]
¡û
>W1910538709
FZHQ01000012
Gammaproteobacteria
Escherichia coli [FZHQ]
92367
92442
+
Met
CAT
[ENA]
¡û
>W1910781917
MPHX01000025
Gammaproteobacteria
Escherichia coli 9_Esco_CA-NL [MPHX]
105147
105222
+
Met
CAT
[ENA]
¡û
>W1910816217
MVPN01000187
Gammaproteobacteria
Escherichia coli GMR-RA-229.16 [MVPN]
212
287
+
Met
CAT
[ENA]
¡û
>W1910922535
NIFX01000067
Gammaproteobacteria
Escherichia coli SZM334-1 [NIFX]
32339
32414
+
Met
CAT
[ENA]
¡û
>W1910944568
NJJF01000031
Gammaproteobacteria
Escherichia coli MOD1-EC911 [NJJF]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1910991199
NKUO01000047
Gammaproteobacteria
Escherichia coli MOD1-EC5931 [NKUO]
265
190
-
Met
CAT
[ENA]
¡û
>W1910991730
NKUW01000001
Gammaproteobacteria
Escherichia coli MOD1-EC5921 [NKUW]
65470
65395
-
Met
CAT
[ENA]
¡û
>W1910995396
NKYO01000081
Gammaproteobacteria
Escherichia coli SN137 [NKYO]
28246
28321
+
Met
CAT
[ENA]
¡û
>W1911005300
NLGL01000031
Gammaproteobacteria
Escherichia coli MOD1-EC5730 [NLGL]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911013831
NLKP01000031
Gammaproteobacteria
Escherichia coli MOD1-EC5584 [NLKP]
32008
32083
+
Met
CAT
[ENA]
¡û
>W1911020419
NLOJ01000038
Gammaproteobacteria
Escherichia coli MOD1-EC5479 [NLOJ]
6155
6080
-
Met
CAT
[ENA]
¡û
>W1911035296
NLWV01000088
Gammaproteobacteria
Escherichia coli MOD1-EC6492 [NLWV]
1827
1752
-
Met
CAT
[ENA]
¡û
>W1911035665
NLXA01000043
Gammaproteobacteria
Escherichia coli MOD1-EC6484 [NLXA]
32626
32551
-
Met
CAT
[ENA]
¡û
>W1911047529
NMDD01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6092 [NMDD]
246399
246324
-
Met
CAT
[ENA]
¡û
>W1911049775
NMEI01000035
Gammaproteobacteria
Escherichia coli MOD1-EC6032 [NMEI]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911052886
NMFZ01000029
Gammaproteobacteria
Escherichia coli MOD1-EC5983 [NMFZ]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911056872
NMIB01000067
Gammaproteobacteria
Escherichia coli MOD1-EC6395 [NMIB]
18686
18761
+
Met
CAT
[ENA]
¡û
>W1911060950
NMKF01000034
Gammaproteobacteria
Escherichia coli MOD1-EC6033 [NMKF]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911062383
NMKX01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6813 [NMKX]
32714
32639
-
Met
CAT
[ENA]
¡û
>W1911085859
NNSY01000033
Gammaproteobacteria
Escherichia coli MOD1-EC6680 [NNSY]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911088000
NNUB01000035
Gammaproteobacteria
Escherichia coli MOD1-EC6649 [NNUB]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911091788
NNWB01000002
Gammaproteobacteria
Escherichia coli MOD1-EC6448 [NNWB]
279898
279823
-
Met
CAT
[ENA]
¡û
>W1911094731
NNXO01000048
Gammaproteobacteria
Escherichia coli MOD1-EC6274 [NNXO]
244
169
-
Met
CAT
[ENA]
¡û
>W1911098013
NNZH01000037
Gammaproteobacteria
Escherichia coli MOD1-EC5895 [NNZH]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911111404
NOGP01000037
Gammaproteobacteria
Escherichia coli MOD1-EC5139 [NOGP]
32107
32182
+
Met
CAT
[ENA]
¡û
>W1911120022
NOMG01000032
Gammaproteobacteria
Escherichia coli MOD1-EC6996 [NOMG]
32399
32474
+
Met
CAT
[ENA]
¡û
>W1911130527
NORW01000035
Gammaproteobacteria
Escherichia coli MOD1-EC6780 [NORW]
32411
32336
-
Met
CAT
[ENA]
¡û
>W1911132814
NOTB01000034
Gammaproteobacteria
Escherichia coli MOD1-EC6746 [NOTB]
32411
32336
-
Met
CAT
[ENA]
¡û
>W1911135906
NOUS01000024
Gammaproteobacteria
Escherichia coli MOD1-EC6684 [NOUS]
32130
32205
+
Met
CAT
[ENA]
¡û
>W1911166618
NQBM01000066
Gammaproteobacteria
Shigella sonnei ECLC+06 [NQBM]
12923
12998
+
Met
CAT
[ENA]
¡û
>W1911167230
NQBV01000065
Gammaproteobacteria
Escherichia coli ECSW+06 [NQBV]
42836
42761
-
Met
CAT
[ENA]
¡û
>W1911167381
NQBX01000148
Gammaproteobacteria
Escherichia coli ECSW+08 [NQBX]
42836
42761
-
Met
CAT
[ENA]
¡û
>W1911167695
NQCC01000074
Gammaproteobacteria
Shigella sonnei ECSW+13 [NQCC]
92149
92224
+
Met
CAT
[ENA]
¡û
>W1911167719
NQCD01000011
Gammaproteobacteria
Shigella sonnei ECSW+14 [NQCD]
92147
92222
+
Met
CAT
[ENA]
¡û
>W1911223334
NRUV01000141
Gammaproteobacteria
Escherichia coli 3180 [NRUV]
7813
7738
-
Met
CAT
[ENA]
¡û
>W1911224113
NRVF01000073
Gammaproteobacteria
Escherichia coli 1262 [NRVF]
102172
102247
+
Met
CAT
[ENA]
¡û
>W1911224151
NRVG01000027
Gammaproteobacteria
Escherichia coli A190 [NRVG]
18943
18868
-
Met
CAT
[ENA]
¡û
>W1911246761
NSKW01000089
Gammaproteobacteria
Escherichia coli 52 [NSKW]
16672
16597
-
Met
CAT
[ENA]
¡û
>W1911285228
NTMT01000001
Gammaproteobacteria
Escherichia coli N60592 [NTMT]
306581
306656
+
Met
CAT
[ENA]
¡û
>W1911389143
NWAM01000016
Gammaproteobacteria
Escherichia coli F344 [NWAM]
294
219
-
Met
CAT
[ENA]
¡û
>W1911390086
NWAX01000055
Gammaproteobacteria
Escherichia coli C165 [NWAX]
294
219
-
Met
CAT
[ENA]
¡û
>W1911390343
NWBA01000086
Gammaproteobacteria
Escherichia coli C092 [NWBA]
294
219
-
Met
CAT
[ENA]
¡û
>W1911427754
NXJB01000036
Gammaproteobacteria
Escherichia coli ST-617:E020 [NXJB]
7030
6955
-
Met
CAT
[ENA]
¡û
>W1911431383
NXLG01000015
Gammaproteobacteria
Escherichia coli ST-617:E019 [NXLG]
104769
104844
+
Met
CAT
[ENA]
¡û
>W1911541278
OOHI01000040
Gammaproteobacteria
Escherichia coli [OOHI]
5813
5738
-
Met
CAT
[ENA]
¡û
>W1911688739
QLJR01000011
Gammaproteobacteria
Escherichia coli LMR3154 [QLJR]
48697
48772
+
Met
CAT
[ENA]
¡û
>W1911722832
QRFK01000011
Gammaproteobacteria
Escherichia coli SE575 [QRFK]
294
219
-
Met
CAT
[ENA]
¡û
>W1911810567
QYZM01000048
Gammaproteobacteria
Escherichia coli BT21 [QYZM]
34679
34604
-
Met
CAT
[ENA]
¡û
>W1810024262
BGSZ01000016
Gammaproteobacteria
Escherichia coli TUM18616 [BGSZ]
12479
12404
-
Met
CAT
[ENA]
¡û
>W1810297737
PTMG01000010
Gammaproteobacteria
Escherichia coli YH17186 [PTMG]
32351
32276
-
Met
CAT
[ENA]
¡û
>W1810360203
PVPN01000051
Gammaproteobacteria
Escherichia coli B19783 [PVPN]
63646
63571
-
Met
CAT
[ENA]
¡û
>W1810582181
QEUE01000012
Gammaproteobacteria
Escherichia coli E34 [QEUE]
32975
32900
-
Met
CAT
[ENA]
¡û
>W1810720194
QNRB01000001
Gammaproteobacteria
Escherichia coli FP3 [QNRB]
677886
677961
+
Met
CAT
[ENA]
¡û
>W1810728656
QOEY01000003
Gammaproteobacteria
Escherichia coli AVC226 [QOEY]
6893
6818
-
Met
CAT
[ENA]
¡û
>W1810732911
QOGZ01000008
Gammaproteobacteria
Escherichia coli AVC211 [QOGZ]
6893
6818
-
Met
CAT
[ENA]
¡û
>W1510721231
CXWW01000006
Gammaproteobacteria
Escherichia coli [CXWW]
57342
57267
-
Met
CAT
[ENA]
¡û
>W1510724228
CXYJ01000006
Gammaproteobacteria
Escherichia coli [CXYJ]
57342
57267
-
Met
CAT
[ENA]
¡û
>W1511497582
JWZB01000001
Gammaproteobacteria
Escherichia coli CVM N36210PS [JWZB]
187
112
-
Met
CAT
[ENA]
¡û
>W1610790710
LOIP01000085
Gammaproteobacteria
Escherichia coli [LOIP]
194
119
-
Met
CAT
[ENA]
¡û
>W1610795836
LONT01000023
Gammaproteobacteria
Escherichia coli [LONT]
101549
101624
+
Met
CAT
[ENA]
¡û
>W1710737706
LGLX01000058
Gammaproteobacteria
Escherichia coli [LGLX]
698
623
-
Met
CAT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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