This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.471975 (144 seq.)
>W1711581266
MNTW01000008
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
41296
41221
-
Phe
GAA
[ENA]
¡û
>C171129829
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1720732
1720657
-
Phe
GAA
-
¡û
>W131215428
ATUZ01000017
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
4187
4262
+
Phe
GAA
[ENA]
¡û
>W131215482
ATVA01000017
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
166016
165941
-
Phe
GAA
[ENA]
¡û
>WENV180205819
OBAH01120876
[OBAH] human gut metagenome; human gut
229
303
+
Phe
GAA
[ENA]
¢þ
>WENV180208125
OBAI01064189
[OBAI] human gut metagenome; human gut
148
73
-
Phe
GAA
[ENA]
¢þ
>WENV180276596
OBHU01046113
[OBHU] human gut metagenome; feces
86
161
+
Phe
GAA
[ENA]
¢þ
>WENV180324011
OBKR01120685
[OBKR] human gut metagenome; feces
216
291
+
Phe
GAA
[ENA]
¢þ
>WENV180534583
OCHM01019995
[OCHM] human gut metagenome; human gut
26
101
+
Phe
GAA
[ENA]
¢þ
>WENV180547805
OCIU01115669
[OCIU] human gut metagenome; human gut
308
383
+
Phe
GAA
[ENA]
¢þ
>WENV180620206
OCQB01040756
[OCQB] human gut metagenome; human gut
59
134
+
Phe
GAA
[ENA]
¢þ
>WENV180762366
ODHZ01112962
[ODHZ] human metagenome; G_DNA_Stool
318
393
+
Phe
GAA
[ENA]
¢þ
>WENV180963523
ODUN01231891
[ODUN] human metagenome; G_DNA_Stool
89
14
-
Phe
GAA
[ENA]
¢þ
>WENV180972316
ODUU01402752
[ODUU] human metagenome; G_DNA_Stool
84
159
+
Phe
GAA
[ENA]
¢þ
>WENV181024535
ODWX01103506
[ODWX] human metagenome; G_DNA_Stool
329
404
+
Phe
GAA
[ENA]
¢þ
>WENV181256675
OFFT01017138
[OFFT] mouse gut metagenome; faeces
1218
1293
+
Phe
GAA
[ENA]
¢þ
>WENV181271134
OFGF01007686
[OFGF] mouse gut metagenome; faeces
637
562
-
Phe
GAA
[ENA]
¢þ
>WENV181332610
OFMA01003438
[OFMA] human gut metagenome; human gut
6934
7009
+
Phe
GAA
[ENA]
¢þ
>WENV181341367
OFMH01052937
[OFMH] human gut metagenome; human gut
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV181445982
OGDS01037401
[OGDS] metagenome; Human gut stool
934
859
-
Phe
GAA
[ENA]
¢þ
>WENV181452014
OGDY01052373
[OGDY] metagenome; Human gut stool
362
437
+
Phe
GAA
[ENA]
¢þ
>WENV181460686
OGEL01037401
[OGEL] metagenome; Human gut stool
934
859
-
Phe
GAA
[ENA]
¢þ
>WENV181468957
OGES01023545
[OGES] metagenome; Human gut stool
313
388
+
Phe
GAA
[ENA]
¢þ
>WENV181504077
OGGJ01022286
[OGGJ] metagenome; Human gut stool
1505
1430
-
Phe
GAA
[ENA]
¢þ
>WENV181505092
OGGK01003266
[OGGK] metagenome; Human gut stool
7061
7136
+
Phe
GAA
[ENA]
¢þ
>WENV181525109
OGHJ01000012
[OGHJ] metagenome; Human gut stool
220446
220371
-
Phe
GAA
[ENA]
¢þ
>WENV181529185
OGHL01033340
[OGHL] metagenome; Human gut stool
250
325
+
Phe
GAA
[ENA]
¢þ
>WENV181539981
OGIA01001445
[OGIA] metagenome; Human gut stool
8020
8095
+
Phe
GAA
[ENA]
¢þ
>WENV181578012
OGJY01000194
[OGJY] metagenome; Human gut stool
22181
22256
+
Phe
GAA
[ENA]
¢þ
>WENV181603919
OGLI01002782
[OGLI] metagenome; Human gut stool
7876
7951
+
Phe
GAA
[ENA]
¢þ
>WENV181621633
OGMF01009986
[OGMF] metagenome; Human gut stool
2165
2240
+
Phe
GAA
[ENA]
¢þ
>WENV181640902
OGNF01000702
[OGNF] metagenome; Human gut stool
7906
7981
+
Phe
GAA
[ENA]
¢þ
>WENV181669536
OGOL01051163
[OGOL] human gut metagenome; faeces
216
141
-
Phe
GAA
[ENA]
¢þ
>WENV181675793
OGOP01012895
[OGOP] human gut metagenome; faeces
2717
2642
-
Phe
GAA
[ENA]
¢þ
>WENV181688421
OGOX01045213
[OGOX] human gut metagenome; faeces
620
545
-
Phe
GAA
[ENA]
¢þ
>WENV181710240
OGPN01039552
[OGPN] human gut metagenome; faeces
456
531
+
Phe
GAA
[ENA]
¢þ
>WENV181715208
OGPR01053556
[OGPR] human gut metagenome; faeces
451
526
+
Phe
GAA
[ENA]
¢þ
>WENV181718630
OGPT01031475
[OGPT] human gut metagenome; faeces
1216
1141
-
Phe
GAA
[ENA]
¢þ
>WENV181728143
OGQA01019818
[OGQA] human gut metagenome; faeces
152
77
-
Phe
GAA
[ENA]
¢þ
>WENV181747156
OGQN01013188
[OGQN] human gut metagenome; faeces
2046
1971
-
Phe
GAA
[ENA]
¢þ
>WENV181751435
OGQP01069365
[OGQP] human gut metagenome; faeces
284
209
-
Phe
GAA
[ENA]
¢þ
>WENV181753132
OGQQ01080807
[OGQQ] human gut metagenome; faeces
31
106
+
Phe
GAA
[ENA]
¢þ
>WENV181767406
OGQZ01041164
[OGQZ] human gut metagenome; faeces
496
571
+
Phe
GAA
[ENA]
¢þ
>WENV181772997
OGRD01059177
[OGRD] human gut metagenome; faeces
441
516
+
Phe
GAA
[ENA]
¢þ
>WENV181785499
OGRM01039353
[OGRM] human gut metagenome; faeces
516
441
-
Phe
GAA
[ENA]
¢þ
>WENV181874813
OGXA01084109
[OGXA] human gut metagenome; faeces
192
117
-
Phe
GAA
[ENA]
¢þ
>WENV181877284
OGXD01004110
[OGXD] human gut metagenome; faeces
2868
2793
-
Phe
GAA
[ENA]
¢þ
>WENV181883861
OGXI01016453
[OGXI] human gut metagenome; faeces
1604
1529
-
Phe
GAA
[ENA]
¢þ
>WENV181885302
OGXJ01011269
[OGXJ] human gut metagenome; faeces
446
521
+
Phe
GAA
[ENA]
¢þ
>WENV181891241
OGXO01010021
[OGXO] human gut metagenome; faeces
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV181898949
OGXT01030834
[OGXT] human gut metagenome; faeces
683
608
-
Phe
GAA
[ENA]
¢þ
>WENV181902633
OGXW01055487
[OGXW] human gut metagenome; faeces
254
329
+
Phe
GAA
[ENA]
¢þ
>WENV181903727
OGXX01002514
[OGXX] human gut metagenome; faeces
8423
8348
-
Phe
GAA
[ENA]
¢þ
>WENV181910643
OGYC01026718
[OGYC] human gut metagenome; faeces
1187
1262
+
Phe
GAA
[ENA]
¢þ
>WENV181913805
OGYE01028965
[OGYE] human gut metagenome; faeces
701
776
+
Phe
GAA
[ENA]
¢þ
>WENV181937386
OGYV01071449
[OGYV] human gut metagenome; faeces
303
378
+
Phe
GAA
[ENA]
¢þ
>WENV181942795
OGYZ01001231
[OGYZ] human gut metagenome; faeces
5009
5084
+
Phe
GAA
[ENA]
¢þ
>WENV181953184
OGZI01003477
[OGZI] human gut metagenome; faeces
6079
6004
-
Phe
GAA
[ENA]
¢þ
>WENV181954923
OGZK01000668
[OGZK] human gut metagenome; faeces
9130
9205
+
Phe
GAA
[ENA]
¢þ
>WENV181961230
OGZO01005115
[OGZO] human gut metagenome; faeces
4716
4641
-
Phe
GAA
[ENA]
¢þ
>WENV181973440
OHAA01046952
[OHAA] human gut metagenome; faeces
291
216
-
Phe
GAA
[ENA]
¢þ
>WENV181979935
OHAF01004649
[OHAF] human gut metagenome; faeces
2588
2513
-
Phe
GAA
[ENA]
¢þ
>WENV181985242
OHAJ01001453
[OHAJ] human gut metagenome; faeces
8676
8751
+
Phe
GAA
[ENA]
¢þ
>WENV181991366
OHAQ01001655
[OHAQ] human gut metagenome; faeces
3664
3739
+
Phe
GAA
[ENA]
¢þ
>WENV181995362
OHAT01002292
[OHAT] human gut metagenome; faeces
13767
13842
+
Phe
GAA
[ENA]
¢þ
>WENV182002095
OHAY01068899
[OHAY] human gut metagenome; faeces
103
28
-
Phe
GAA
[ENA]
¢þ
>WENV182009719
OHBJ01036669
[OHBJ] human gut metagenome; faeces
893
818
-
Phe
GAA
[ENA]
¢þ
>WENV182012557
OHBM01042787
[OHBM] human gut metagenome; faeces
330
405
+
Phe
GAA
[ENA]
¢þ
>WENV182135195
OHKI01015992
[OHKI] human gut metagenome; feces
15
90
+
Phe
GAA
[ENA]
¢þ
>WENV182254556
OHTB01028955
[OHTB] human gut metagenome; feces
382
307
-
Phe
GAA
[ENA]
¢þ
>WENV182274104
OHUJ01037094
[OHUJ] human gut metagenome; feces
523
448
-
Phe
GAA
[ENA]
¢þ
>WENV182510101
OIWK01000689
[OIWK] human gut metagenome; faeces
8446
8521
+
Phe
GAA
[ENA]
¢þ
>WENV182536154
OIXH01000223
[OIXH] human gut metagenome; faeces
39133
39208
+
Phe
GAA
[ENA]
¢þ
>WENV182595988
OJIY01000206
[OJIY] metagenome; faeces
3854
3779
-
Phe
GAA
[ENA]
¢þ
>WENV182609642
OJJV01014465
[OJJV] metagenome; faeces
579
504
-
Phe
GAA
[ENA]
¢þ
>WENV182655469
OJMI01044111
[OJMI] human gut metagenome; feces
655
580
-
Phe
GAA
[ENA]
¢þ
>WENV182664815
OJMP01022468
[OJMP] human gut metagenome; feces
97
172
+
Phe
GAA
[ENA]
¢þ
>WENV182676340
OJNQ01084127
[OJNQ] human gut metagenome; feces
356
431
+
Phe
GAA
[ENA]
¢þ
>WENV182693891
OJOH01012110
[OJOH] human gut metagenome; stool sample
1232
1307
+
Phe
GAA
[ENA]
¢þ
>WENV182710651
OJPD01000463
[OJPD] human gut metagenome; stool sample
20399
20324
-
Phe
GAA
[ENA]
¢þ
>WENV182719776
OJPN01000795
[OJPN] human gut metagenome; stool sample
18450
18375
-
Phe
GAA
[ENA]
¢þ
>WENV182727668
OJPW01000067
[OJPW] human gut metagenome; stool sample
55647
55572
-
Phe
GAA
[ENA]
¢þ
>WENV182731357
OJQA01000057
[OJQA] human gut metagenome; stool sample
29635
29560
-
Phe
GAA
[ENA]
¢þ
>WENV182880806
OKSA01001598
[OKSA] human gut metagenome; faeces
15403
15328
-
Phe
GAA
[ENA]
¢þ
>WENV182888858
OKSE01007651
[OKSE] human gut metagenome; faeces
260
335
+
Phe
GAA
[ENA]
¢þ
>WENV182892188
OKSH01028240
[OKSH] human gut metagenome; faeces
466
391
-
Phe
GAA
[ENA]
¢þ
>WENV182930168
OKUQ01044677
[OKUQ] human gut metagenome; feces
21
96
+
Phe
GAA
[ENA]
¢þ
>WENV183026773
OLFU01004842
[OLFU] human gut metagenome; faeces
6652
6577
-
Phe
GAA
[ENA]
¢þ
>WENV183027382
OLFV01000019
[OLFV] human gut metagenome; faeces
108387
108312
-
Phe
GAA
[ENA]
¢þ
>WENV183027997
OLFV01000773
[OLFV] human gut metagenome; faeces
8068
8143
+
Phe
GAA
[ENA]
¢þ
>WENV183029488
OLFW01000374
[OLFW] human gut metagenome; faeces
37211
37286
+
Phe
GAA
[ENA]
¢þ
>WENV183032690
OLFY01000455
[OLFY] human gut metagenome; faeces
25134
25059
-
Phe
GAA
[ENA]
¢þ
>WENV183034907
OLFZ01000837
[OLFZ] human gut metagenome; faeces
22365
22290
-
Phe
GAA
[ENA]
¢þ
>WENV183075283
OLIV01034980
[OLIV] human gut metagenome; stool sample
123
198
+
Phe
GAA
[ENA]
¢þ
>WENV183156840
OLOS01041338
[OLOS] human gut metagenome; faeces
404
329
-
Phe
GAA
[ENA]
¢þ
>WENV183222660
OLQM01002389
[OLQM] human gut metagenome; faeces
4241
4316
+
Phe
GAA
[ENA]
¢þ
>WENV183258492
OLRN01006497
[OLRN] human gut metagenome; faeces
3437
3512
+
Phe
GAA
[ENA]
¢þ
>WENV183270701
OLRV01017486
[OLRV] human gut metagenome; faeces
52
127
+
Phe
GAA
[ENA]
¢þ
>WENV183275139
OLRY01010774
[OLRY] human gut metagenome; faeces
615
690
+
Phe
GAA
[ENA]
¢þ
>WENV183281370
OLSB01083058
[OLSB] human gut metagenome; faeces
206
281
+
Phe
GAA
[ENA]
¢þ
>WENV183284680
OLSD01044421
[OLSD] human gut metagenome; faeces
952
1027
+
Phe
GAA
[ENA]
¢þ
>WENV183331343
OLWB01111315
[OLWB] human gut metagenome; faeces
358
433
+
Phe
GAA
[ENA]
¢þ
>WENV183339951
OLWL01001304
[OLWL] human gut metagenome; feces
13097
13022
-
Phe
GAA
[ENA]
¢þ
>WENV183359938
OLXI01001736
[OLXI] human gut metagenome; feces
1901
1976
+
Phe
GAA
[ENA]
¢þ
>WENV183492751
OMGI01000559
[OMGI] human gut metagenome; human gut
11696
11621
-
Phe
GAA
[ENA]
¢þ
>WENV183501323
OMGS01000050
[OMGS] human gut metagenome; human gut
66093
66018
-
Phe
GAA
[ENA]
¢þ
>WENV183532723
OOAD01006599
[OOAD] human gut metagenome; human gut
2909
2834
-
Phe
GAA
[ENA]
¢þ
>WENV183540195
OOAJ01004395
[OOAJ] human gut metagenome; human gut
557
632
+
Phe
GAA
[ENA]
¢þ
>WENV183560428
OOBT01048207
[OOBT] human gut metagenome; human gut
18
93
+
Phe
GAA
[ENA]
¢þ
>WENV183573892
OOCH01001258
[OOCH] human gut metagenome; human gut
15726
15651
-
Phe
GAA
[ENA]
¢þ
>WENV183575578
OOCI01003501
[OOCI] human gut metagenome; human gut
174
99
-
Phe
GAA
[ENA]
¢þ
>WENV183579385
OOCM01000767
[OOCM] human gut metagenome; human gut
2951
2876
-
Phe
GAA
[ENA]
¢þ
>WENV183597773
OODF01004984
[OODF] human gut metagenome; human gut
2717
2642
-
Phe
GAA
[ENA]
¢þ
>WENV183601071
OODJ01000204
[OODJ] human gut metagenome; human gut
29720
29645
-
Phe
GAA
[ENA]
¢þ
>WENV183604429
OODL01005207
[OODL] human gut metagenome; human gut
4859
4934
+
Phe
GAA
[ENA]
¢þ
>WENV183632447
OOIF01003715
[OOIF] human gut metagenome; human gut
3631
3706
+
Phe
GAA
[ENA]
¢þ
>WENV183633374
OOIG01000440
[OOIG] human gut metagenome; human gut
22156
22231
+
Phe
GAA
[ENA]
¢þ
>WENV183657418
OQWI01010835
[OQWI] human gut metagenome; human gut
2838
2763
-
Phe
GAA
[ENA]
¢þ
>WENV183775801
PPYF01071461
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3520
3595
+
Phe
GAA
[ENA]
¢þ
>WENV183787078
PPYF01312039
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3849
3774
-
Phe
GAA
[ENA]
¢þ
>WENV183788890
PPYF01370954
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6380
6305
-
Phe
GAA
[ENA]
¢þ
>WENV170025899
CDTW01001755
[CDTW] gut metagenome; human stools
2125
2050
-
Phe
GAA
[ENA]
¢þ
>WENV170028820
CDYF01018424
[CDYF] gut metagenome; human stools
1382
1457
+
Phe
GAA
[ENA]
¢þ
>WENV170060038
CDZH01071910
[CDZH] gut metagenome; human stools
31648
31573
-
Phe
GAA
[ENA]
¢þ
>WENV170061461
CDZI01050712
[CDZI] gut metagenome; human stools
15094
15019
-
Phe
GAA
[ENA]
¢þ
>WENV170069832
CDZQ01004688
[CDZQ] gut metagenome; human stools
14410
14335
-
Phe
GAA
[ENA]
¢þ
>WENV170076243
CDZT01060871
[CDZT] gut metagenome; human stools
7773
7848
+
Phe
GAA
[ENA]
¢þ
>WENV170076782
CDZU01013096
[CDZU] gut metagenome; human stools
7323
7398
+
Phe
GAA
[ENA]
¢þ
>WENV170078125
CDZV01010653
[CDZV] gut metagenome; human stools
13802
13727
-
Phe
GAA
[ENA]
¢þ
>WENV170089230
CEAF01000020
[CEAF] gut metagenome; human stools
4817
4892
+
Phe
GAA
[ENA]
¢þ
>WENV170093876
CEAH01043191
[CEAH] gut metagenome; human stools
4482
4557
+
Phe
GAA
[ENA]
¢þ
>C181081065
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2749567
2749492
-
Phe
GAA
-
¡û
>C191000246
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
3053644
3053719
+
Phe
GAA
-
¡û
>C191149672
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
275437
275512
+
Phe
GAA
-
¡û
>W09112390
ABXU01000082
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
95
170
+
Phe
GAA
[ENA]
¡û
>W09118235
ACCT01000005
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
121631
121556
-
Phe
GAA
[ENA]
¡û
>C09103872
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
390060
389985
-
Phe
GAA
[Ensembl]
¡û
>W1810792934
QRJJ01000008
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
79986
79911
-
Phe
GAA
[ENA]
¡û
>W10111690
ADDR01000073
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
4184
4259
+
Phe
GAA
[ENA]
¡û
>W11107009
ACWM01000050
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
41798
41873
+
Phe
GAA
[ENA]
¡û
>W11114617
ADDR01000073
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
4184
4259
+
Phe
GAA
[ENA]
¡û
>C161068990
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
2977087
2977012
-
Phe
GAA
[Ensembl]
¡û
>W1710515601
FNBX01000009
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
17973
18048
+
Phe
GAA
[ENA]
¡û
>W1710579852
FPIW01000010
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
32531
32456
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK