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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47219 (24 seq.)
>W1711326609
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343265
343176
-
Ser
CGA
[ENA]
¡û
>W131050704
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
44212
44301
+
Ser
CGA
[ENA]
¡û
>W131050755
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
45029
45118
+
Ser
CGA
[ENA]
¡û
>W131176269
ARJX01000037
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
128181
128270
+
Ser
CGA
[ENA]
¡û
>C001367
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
4155777
4155688
-
Ser
CGA
[Ensembl]
¡û
>WENV180029865
FTJL01010138
[FTJL] metagenome; soil
287
376
+
Ser
CGA
[ENA]
¢þ
>WENV180265389
OBEQ011654102
[OBEQ] groundwater metagenome; groundwater
631
542
-
Ser
CGA
[ENA]
¢þ
>WENV183687381
ORMF011138728
[ORMF] groundwater metagenome; groundwater
44894
44983
+
Ser
CGA
[ENA]
¢þ
>WENV170561127
CZCA01003231
[CZCA] anaerobic digester metagenome; anaerobic digester
5885
5974
+
Ser
CGA
[ENA]
¢þ
>WENV170650718
JRYE01013145
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
648
737
+
Ser
CGA
[ENA]
¢þ
>WENV170650724
JRYE01013547
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
8777
8688
-
Ser
CGA
[ENA]
¢þ
>WENV170652557
JRYH01006084
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2429
2518
+
Ser
CGA
[ENA]
¢þ
>WENV170653037
JRYI01001198
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
11288
11199
-
Ser
CGA
[ENA]
¢þ
>W141463889
JFJV02000028
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
22120
22209
+
Ser
CGA
[ENA]
¡û
>C191019181
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3625804
3625715
-
Ser
CGA
-
¡û
>C191022918
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1785925
1785836
-
Ser
CGA
-
¡û
>C151070621
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
970950
971039
+
Ser
CGA
[Ensembl]
¡û
>C151076201
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
3446923
3446834
-
Ser
CGA
-
¡û
>W1511534657
JYOD01000036
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
17980
18069
+
Ser
CGA
[ENA]
¡û
>W1511581008
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
139160
139071
-
Ser
CGA
[ENA]
¡û
>W121033618
AHJE01000105
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
20465
20554
+
Ser
CGA
[ENA]
¡û
>W1611063345
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343265
343176
-
Ser
CGA
[ENA]
¡û
>W1710511895
FMYZ01000002
Betaproteobacteria
Cupriavidus sp. YR651 [FMYZ]
635555
635644
+
Ser
CGA
[ENA]
¡û
>W1710595722
FTMD01000003
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
239655
239566
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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