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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472247 (5 seq.)
>WENV181479392
OGFG01002244
[OGFG] metagenome; Human gut stool
3087
3162
+
Thr
CGT
[ENA]
¢þ
>WENV181503471
OGGJ01002853
[OGGJ] metagenome; Human gut stool
1723
1648
-
Thr
CGT
[ENA]
¢þ
>WENV181629332
OGMP01000605
[OGMP] metagenome; Human gut stool
9825
9900
+
Thr
CGT
[ENA]
¢þ
>WENV181644137
OGNL01002592
[OGNL] metagenome; Human gut stool
2078
2003
-
Thr
CGT
[ENA]
¢þ
>W1810873441
QUEM01000004
Bacteroidota
Bacteroides sp. OF04-15BH [QUEM]
154771
154696
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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