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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4723 (29 seq.)
>W131036241
ALVJ01000024
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
225173
225266
+
Ser
GCT
[ENA]
¡û
>W1711584859
MNYZ01000059
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
13214
13307
+
Ser
GCT
[ENA]
¡û
>W1711666649
MRCD01000112
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
27431
27524
+
Ser
GCT
[ENA]
¡û
>W141038225
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
1867975
1868068
+
Ser
GCT
[ENA]
¡û
>W141067396
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
2047428
2047521
+
Ser
GCT
[ENA]
¡û
>W141096696
AVFS01000017
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
23680
23773
+
Ser
GCT
[ENA]
¡û
>W141096749
AVFT01000048
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
31975
32068
+
Ser
GCT
[ENA]
¡û
>W141096797
AVFU01000138
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
39296
39389
+
Ser
GCT
[ENA]
¡û
>W141096824
AVFV01000139
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
7463
7370
-
Ser
GCT
[ENA]
¡û
>W141096866
AVFW01000135
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
7577
7670
+
Ser
GCT
[ENA]
¡û
>W141096892
AVFX01000048
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
45233
45140
-
Ser
GCT
[ENA]
¡û
>W141096909
AVFY01000001
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
60339
60246
-
Ser
GCT
[ENA]
¡û
>W141242764
CAIS01000894
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
4365
4274
-
Ser
GCT
[ENA]
¡û
>W141242873
CAIY01000044
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
87257
87348
+
Ser
GCT
[ENA]
¡û
>WENV170640183
JFJP01014257
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5978
6071
+
Ser
GCT
[ENA]
¢þ
>C181004892
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
5315401
5315494
+
Ser
GCT
-
¡û
>C181004922
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
4540640
4540733
+
Ser
GCT
-
¡û
>C191000786
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
1197398
1197491
+
Ser
GCT
-
¡û
>C191083040
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3888399
3888492
+
Ser
GCT
-
¡û
>W1910175480
BJCD01000050
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
8869
8962
+
Ser
GCT
[ENA]
¡û
>W1910194130
CZCS01000004
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
47870
47779
-
Ser
GCT
[ENA]
¡û
>W1910194176
CZCT02000035
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
1459
1366
-
Ser
GCT
[ENA]
¡û
>W1910194186
CZCT02000081
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
459
552
+
Ser
GCT
[ENA]
¡û
>W1910194253
CZCU01000153
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
112464
112557
+
Ser
GCT
[ENA]
¡û
>W1910194298
CZCZ01000008
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
81542
81635
+
Ser
GCT
[ENA]
¡û
>W1910194305
CZDF01000132
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
1245514
1245607
+
Ser
GCT
[ENA]
¡û
>W1910502520
FYBH01000100
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
16100
16009
-
Ser
GCT
[ENA]
¡û
>C131004377
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
59455
59548
+
Ser
GCT
[Ensembl]
¡û
>C131004900
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
229988
229895
-
Ser
GCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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