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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472341 (41 seq.)
>W1710925670
LODL01000009
Betaproteobacteria
Dechloromonas denitrificans [LODL]
308
233
-
Gly
GCC
[ENA]
¡û
>W1710925679
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
105515
105590
+
Gly
GCC
[ENA]
¡û
>W1711718046
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
276204
276279
+
Gly
GCC
[ENA]
¡û
>W1711718062
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
532370
532295
-
Gly
GCC
[ENA]
¡û
>W1711718064
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
532161
532086
-
Gly
GCC
[ENA]
¡û
>W131223565
AUCE01000008
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
180271
180196
-
Gly
GCC
[ENA]
¡û
>W131223567
AUCE01000008
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
180062
179987
-
Gly
GCC
[ENA]
¡û
>WENV180271717
OBEQ012306040
[OBEQ] groundwater metagenome; groundwater
739
814
+
Gly
GCC
[ENA]
¢þ
>WENV180283799
OBID01003254
[OBID] metagenome; sludge
1032
957
-
Gly
GCC
[ENA]
¢þ
>WENV180283841
OBID01004202
[OBID] metagenome; sludge
2233
2308
+
Gly
GCC
[ENA]
¢þ
>WENV180285125
OBID01236367
[OBID] metagenome; sludge
307
232
-
Gly
GCC
[ENA]
¢þ
>WENV180311752
OBJT01540493
[OBJT] soil metagenome; soil
193
118
-
Gly
GCC
[ENA]
¢þ
>WENV180372678
OBOI01109168
[OBOI] sediment metagenome; sediment
112
37
-
Gly
GCC
[ENA]
¢þ
>WENV181231288
OFEK01018201
[OFEK] activated sludge metagenome; Anaerobic digester
1170
1245
+
Gly
GCC
[ENA]
¢þ
>WENV181231604
OFEK01041181
[OFEK] activated sludge metagenome; Anaerobic digester
189
264
+
Gly
GCC
[ENA]
¢þ
>WENV181311074
OFJB01000006
[OFJB] sludge metagenome; sludge
2
77
+
Gly
GCC
[ENA]
¢þ
>WENV181311124
OFJB01000042
[OFJB] sludge metagenome; sludge
46062
46137
+
Gly
GCC
[ENA]
¢þ
>WENV181311140
OFJB01000057
[OFJB] sludge metagenome; sludge
75
1
-
Gly
GCC
[ENA]
¢þ
>WENV181375763
OFQZ01002534
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
3441
3516
+
Gly
GCC
[ENA]
¢þ
>WENV181381155
OFRE01034487
[OFRE] wastewater metagenome; Exp Tend NO 50WW
575
650
+
Gly
GCC
[ENA]
¢þ
>WENV181389715
OFRO01002279
[OFRO] wastewater metagenome; Exp Tend NO 10WW
1883
1808
-
Gly
GCC
[ENA]
¢þ
>WENV181414984
OGCL01002740
[OGCL] hot springs metagenome; Hot spring water
2191
2116
-
Gly
GCC
[ENA]
¢þ
>WENV181414986
OGCL01002740
[OGCL] hot springs metagenome; Hot spring water
1982
1907
-
Gly
GCC
[ENA]
¢þ
>WENV181731308
OGQD01000334
[OGQD] human gut metagenome; faeces
15077
15002
-
Gly
GCC
[ENA]
¢þ
>WENV181731310
OGQD01000334
[OGQD] human gut metagenome; faeces
14872
14797
-
Gly
GCC
[ENA]
¢þ
>WENV181843400
OGVU01012310
[OGVU] freshwater metagenome; freshwater
665
740
+
Gly
GCC
[ENA]
¢þ
>WENV181857100
OGWN01050899
[OGWN] freshwater metagenome; freshwater
288
363
+
Gly
GCC
[ENA]
¢þ
>WENV170009332
APMI01000098
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
113506
113431
-
Gly
GCC
[ENA]
¢þ
>WENV170009334
APMI01000098
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
113295
113220
-
Gly
GCC
[ENA]
¢þ
>WENV170669208
LAHR01037739
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
205
280
+
Gly
GCC
[ENA]
¢þ
>WENV170975038
MTKY01087699
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
951
1026
+
Gly
GCC
[ENA]
¢þ
>WENV170975140
MTKY01093611
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
162
87
-
Gly
GCC
[ENA]
¢þ
>C181060408
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
915631
915706
+
Gly
GCC
-
¡û
>C181060410
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
915863
915938
+
Gly
GCC
-
¡û
>C181060472
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3719900
3719975
+
Gly
GCC
-
¡û
>C181060474
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3720132
3720207
+
Gly
GCC
-
¡û
>C191081659
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1526924
1526999
+
Gly
GCC
-
¡û
>C191081661
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1527134
1527209
+
Gly
GCC
-
¡û
>W11185875
CACR01001282
Betaproteobacteria
Thauera selenatis AX [CACR]
3803
3728
-
Gly
GCC
[ENA]
¡û
>W1610783316
LODL01000009
Betaproteobacteria
Dechloromonas denitrificans [LODL]
308
233
-
Gly
GCC
[ENA]
¡û
>W1610783325
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
105515
105590
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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