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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472411 (40 seq.)
>W1712103019
NIOG01000002
Betaproteobacteria
Roseateles terrae [NIOG]
170075
170000
-
Lys
CTT
[ENA]
¡û
>W131224240
AUCQ01000014
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
83369
83294
-
Lys
CTT
[ENA]
¡û
>W131224241
AUCQ01000014
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
83240
83165
-
Lys
CTT
[ENA]
¡û
>C000373
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
3523853
3523928
+
Lys
CTT
[Ensembl]
¡û
>WENV180019445
FTBV01002463
[FTBV] metagenome; soil
31307
31232
-
Lys
CTT
[ENA]
¢þ
>WENV180247584
OBEQ010042881
[OBEQ] groundwater metagenome; groundwater
18594
18519
-
Lys
CTT
[ENA]
¢þ
>WENV181164766
OEIR01354262
[OEIR] soil metagenome; soil
160
235
+
Lys
CTT
[ENA]
¢þ
>WENV181223690
OFDC01075239
[OFDC] hot springs metagenome; Water
437
362
-
Lys
CTT
[ENA]
¢þ
>WENV181227069
OFDN01001499
[OFDN] hot springs metagenome; Water
9314
9389
+
Lys
CTT
[ENA]
¢þ
>W141169895
AXWS01000015
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
211728
211653
-
Lys
CTT
[ENA]
¡û
>W141170907
AXZB01000045
Betaproteobacteria
Burkholderiales bacterium JGI 0001003-A5 [AXZB]
521
446
-
Lys
CTT
[ENA]
¡û
>WENV181732553
OGQD01052141
[OGQD] human gut metagenome; faeces
308
383
+
Lys
CTT
[ENA]
¢þ
>WENV181834912
OGVG01014559
[OGVG] freshwater metagenome; freshwater
301
226
-
Lys
CTT
[ENA]
¢þ
>W141207218
AZND01000101
Betaproteobacteria
Methylibium sp. T29 [AZND]
10116
10191
+
Lys
CTT
[ENA]
¡û
>W141214263
AZSN01000127
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
10113
10188
+
Lys
CTT
[ENA]
¡û
>WENV170012412
APMI01170810
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
13
88
+
Lys
CTT
[ENA]
¢þ
>WENV170554474
CXWK01071800
[CXWK] wastewater metagenome; activated sludge
27
102
+
Lys
CTT
[ENA]
¢þ
>WENV170558321
CXWL01063217
[CXWL] groundwater metagenome; biofilm material
6545
6470
-
Lys
CTT
[ENA]
¢þ
>C181019023
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
72008
71933
-
Lys
CTT
-
¡û
>C181159998
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1233566
1233491
-
Lys
CTT
-
¡û
>W09105947
AASD01000009
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
66263
66338
+
Lys
CTT
[ENA]
¡û
>W09117943
ACCM01000005
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
115770
115695
-
Lys
CTT
[ENA]
¡û
>W1910175596
BJCL01000003
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
129849
129774
-
Lys
CTT
[ENA]
¡û
>W1910699729
MERU01000009
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
350733
350808
+
Lys
CTT
[ENA]
¡û
>W1910699913
MESA01000021
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
109142
109067
-
Lys
CTT
[ENA]
¡û
>W1910700054
MESD01000133
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 [MESD]
26943
27018
+
Lys
CTT
[ENA]
¡û
>W1910700319
MESK01000023
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
297404
297479
+
Lys
CTT
[ENA]
¡û
>C09104053
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
2854648
2854723
+
Lys
CTT
[Ensembl]
¡û
>W1910803576
MTBE01000004
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
34108
34033
-
Lys
CTT
[ENA]
¡û
>W1810088947
PGEI01000029
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
2300
2225
-
Lys
CTT
[ENA]
¡û
>ENV09001481
ABSR01015965
Freshwater sediment metagenome lwMethylamine_C1
168
93
-
Lys
CTT
[ENA]
¡û
>W1511348527
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
1141576
1141501
-
Lys
CTT
[ENA]
¡û
>W1511390744
JSYI01000032
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
191590
191665
+
Lys
CTT
[ENA]
¡û
>W1511552094
JZUE01000003
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
155685
155760
+
Lys
CTT
[ENA]
¡û
>C121001090
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1165363
1165438
+
Lys
CTT
[Ensembl]
¡û
>W121036339
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
1572821
1572896
+
Lys
CTT
[ENA]
¡û
>W121060110
AJFF01000234
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
5715
5790
+
Lys
CTT
[ENA]
¡û
>W1610042842
BAZJ01000417
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
1722
1797
+
Lys
CTT
[ENA]
¡û
>W1710040002
BAZJ01000417
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
1722
1797
+
Lys
CTT
[ENA]
¡û
>W1710522994
FNHP01000006
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
226045
226120
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK