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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472753 (57 seq.)
>W1711578921
MNRD01000123
Bacillota
Clostridiales bacterium 41_12_two_minus [MNRD]
24529
24604
+
Pro
GGG
[ENA]
¡û
>WENV180217223
OBAR01000779
[OBAR] human gut metagenome; human gut
27752
27677
-
Pro
GGG
[ENA]
¢þ
>WENV180336837
OBLG01005979
[OBLG] human gut metagenome; human gut
86
11
-
Pro
GGG
[ENA]
¢þ
>WENV180530006
OCHK01000717
[OCHK] human gut metagenome; human gut
19520
19445
-
Pro
GGG
[ENA]
¢þ
>WENV180536586
OCHN01021500
[OCHN] human gut metagenome; human gut
223
148
-
Pro
GGG
[ENA]
¢þ
>WENV180547335
OCIU01025833
[OCIU] human gut metagenome; human gut
597
522
-
Pro
GGG
[ENA]
¢þ
>WENV180616626
OCQA01000480
[OCQA] human gut metagenome; human gut
11055
11130
+
Pro
GGG
[ENA]
¢þ
>WENV180703918
ODEI01007692
[ODEI] human metagenome; G_DNA_Stool
3492
3567
+
Pro
GGG
[ENA]
¢þ
>WENV180993471
ODVQ01003037
[ODVQ] human metagenome; G_DNA_Stool
777
852
+
Pro
GGG
[ENA]
¢þ
>WENV181357414
OFMU01016973
[OFMU] human gut metagenome; human gut
2025
2100
+
Pro
GGG
[ENA]
¢þ
>WENV181479605
OGFG01004126
[OGFG] metagenome; Human gut stool
2046
1971
-
Pro
GGG
[ENA]
¢þ
>WENV181485958
OGFM01041004
[OGFM] metagenome; Human gut stool
84
159
+
Pro
GGG
[ENA]
¢þ
>WENV181621661
OGMF01010828
[OGMF] metagenome; Human gut stool
458
533
+
Pro
GGG
[ENA]
¢þ
>WENV181691185
OGOZ01003199
[OGOZ] human gut metagenome; faeces
7447
7372
-
Pro
GGG
[ENA]
¢þ
>WENV181718384
OGPT01016426
[OGPT] human gut metagenome; faeces
2849
2924
+
Pro
GGG
[ENA]
¢þ
>WENV181772475
OGRD01004335
[OGRD] human gut metagenome; faeces
2739
2664
-
Pro
GGG
[ENA]
¢þ
>WENV181803578
OGSD01024797
[OGSD] human gut metagenome; faeces
1564
1489
-
Pro
GGG
[ENA]
¢þ
>WENV181830574
OGUO01005907
[OGUO] human gut metagenome; faeces
5418
5493
+
Pro
GGG
[ENA]
¢þ
>WENV181831875
OGUP01003508
[OGUP] human gut metagenome; faeces
6907
6832
-
Pro
GGG
[ENA]
¢þ
>WENV181992368
OHAQ01046825
[OHAQ] human gut metagenome; faeces
573
648
+
Pro
GGG
[ENA]
¢þ
>WENV182189625
OHOO01020859
[OHOO] human gut metagenome; feces
715
790
+
Pro
GGG
[ENA]
¢þ
>WENV182246909
OHSM01008770
[OHSM] human gut metagenome; feces
867
942
+
Pro
GGG
[ENA]
¢þ
>WENV182393340
OIEH01031679
[OIEH] human gut metagenome; human gut
122
197
+
Pro
GGG
[ENA]
¢þ
>WENV182398688
OIEN01006225
[OIEN] human gut metagenome; human gut
3474
3399
-
Pro
GGG
[ENA]
¢þ
>WENV182416616
OIGD01002166
[OIGD] human gut metagenome; human gut
13329
13254
-
Pro
GGG
[ENA]
¢þ
>WENV182524775
OIWT01000557
[OIWT] human gut metagenome; faeces
44538
44613
+
Pro
GGG
[ENA]
¢þ
>WENV182524978
OIWT01000989
[OIWT] human gut metagenome; faeces
3063
2988
-
Pro
GGG
[ENA]
¢þ
>WENV182528429
OIWU01003660
[OIWU] human gut metagenome; faeces
8584
8659
+
Pro
GGG
[ENA]
¢þ
>WENV182616548
OJKC01034565
[OJKC] metagenome; faeces
1154
1229
+
Pro
GGG
[ENA]
¢þ
>WENV182651120
OJMH01000835
[OJMH] human gut metagenome; feces
19320
19245
-
Pro
GGG
[ENA]
¢þ
>WENV182662064
OJMN01010499
[OJMN] human gut metagenome; feces
1218
1143
-
Pro
GGG
[ENA]
¢þ
>WENV182667532
OJNI01004193
[OJNI] human gut metagenome; feces
4369
4294
-
Pro
GGG
[ENA]
¢þ
>WENV182885863
OKSC01033751
[OKSC] human gut metagenome; faeces
1300
1225
-
Pro
GGG
[ENA]
¢þ
>WENV182900949
OKSU01028703
[OKSU] human gut metagenome; feces
78
153
+
Pro
GGG
[ENA]
¢þ
>WENV182972648
OKXI01066784
[OKXI] human gut metagenome; human gut
125
50
-
Pro
GGG
[ENA]
¢þ
>WENV183037137
OLGA01008708
[OLGA] human gut metagenome; faeces
4455
4530
+
Pro
GGG
[ENA]
¢þ
>WENV183041064
OLGD01000317
[OLGD] human gut metagenome; faeces
98174
98249
+
Pro
GGG
[ENA]
¢þ
>WENV183042000
OLGD01001946
[OLGD] human gut metagenome; faeces
3091
3016
-
Pro
GGG
[ENA]
¢þ
>WENV183044808
OLGE01002696
[OLGE] human gut metagenome; faeces
12256
12331
+
Pro
GGG
[ENA]
¢þ
>WENV183068222
OLIQ01003523
[OLIQ] metagenome; faeces
3249
3174
-
Pro
GGG
[ENA]
¢þ
>WENV183072778
OLIT01005261
[OLIT] human gut metagenome; feces
5784
5709
-
Pro
GGG
[ENA]
¢þ
>WENV183076023
OLIW01001149
[OLIW] human gut metagenome; feces
5283
5358
+
Pro
GGG
[ENA]
¢þ
>WENV183324749
OLVY01045996
[OLVY] human gut metagenome; feces
15
90
+
Pro
GGG
[ENA]
¢þ
>WENV183381369
OLYJ01004607
[OLYJ] human gut metagenome; feces
1485
1560
+
Pro
GGG
[ENA]
¢þ
>WENV183391034
OLZC01018356
[OLZC] human gut metagenome; feces
666
591
-
Pro
GGG
[ENA]
¢þ
>WENV183401498
OLZT01030145
[OLZT] human gut metagenome; feces
188
263
+
Pro
GGG
[ENA]
¢þ
>WENV183403076
OLZV01014670
[OLZV] human gut metagenome; feces
38
113
+
Pro
GGG
[ENA]
¢þ
>WENV183435713
OMCA01042198
[OMCA] human gut metagenome; feces
16
91
+
Pro
GGG
[ENA]
¢þ
>WENV183444204
OMCO01000530
[OMCO] human gut metagenome; feces
6130
6205
+
Pro
GGG
[ENA]
¢þ
>WENV183445330
OMCP01009820
[OMCP] human gut metagenome; feces
1448
1523
+
Pro
GGG
[ENA]
¢þ
>WENV183470692
OMEK01002081
[OMEK] human gut metagenome; feces
10
85
+
Pro
GGG
[ENA]
¢þ
>WENV183517907
OMNP01024932
[OMNP] human gut metagenome; feces
3
78
+
Pro
GGG
[ENA]
¢þ
>WENV183641335
OQVL01032091
[OQVL] human gut metagenome; human gut
1261
1186
-
Pro
GGG
[ENA]
¢þ
>WENV183648798
OQVS01039046
[OQVS] human gut metagenome; human gut
1431
1506
+
Pro
GGG
[ENA]
¢þ
>WENV170051026
CDZB01052234
[CDZB] gut metagenome; human stools
6132
6057
-
Pro
GGG
[ENA]
¢þ
>WENV170101276
CEAR01027137
[CEAR] gut metagenome; human stools
4993
5068
+
Pro
GGG
[ENA]
¢þ
>WENV170108535
CECA01034391
[CECA] gut metagenome; human stools
6251
6326
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK