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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47350 (20 seq.)
>W1710995797
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
234322
234409
+
Ser
TGA
[ENA]
¡û
>W1710995798
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
281188
281275
+
Ser
TGA
[ENA]
¡û
>W1710995840
LQAQ01000100
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
115652
115565
-
Ser
TGA
[ENA]
¡û
>WENV183801553
PVBE010685064
[PVBE] marine metagenome; water
20107
20192
+
Ser
TGA
[ENA]
¢þ
>C191127440
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
3646184
3646269
+
Ser
TGA
-
¡û
>C191127441
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
3646429
3646514
+
Ser
TGA
-
¡û
>C191127442
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
3681732
3681817
+
Ser
TGA
-
¡û
>W1511359597
JRYR01000011
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
221100
221185
+
Ser
TGA
[ENA]
¡û
>W1511359598
JRYR01000011
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
221379
221464
+
Ser
TGA
[ENA]
¡û
>W1511359599
JRYR01000011
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
255602
255687
+
Ser
TGA
[ENA]
¡û
>W1511393389
JTAM01000004
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
123835
123922
+
Ser
TGA
[ENA]
¡û
>W1511393401
JTAM01000006
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
54022
53935
-
Ser
TGA
[ENA]
¡û
>W1511393402
JTAM01000006
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
7534
7447
-
Ser
TGA
[ENA]
¡û
>W1511590375
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3785529
3785442
-
Ser
TGA
[ENA]
¡û
>C161002909
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3399442
3399529
+
Ser
TGA
[Ensembl]
¡û
>C161002910
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3399711
3399798
+
Ser
TGA
[Ensembl]
¡û
>C161002911
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3434098
3434185
+
Ser
TGA
[Ensembl]
¡û
>W1610850454
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
234322
234409
+
Ser
TGA
[ENA]
¡û
>W1610850455
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
281188
281275
+
Ser
TGA
[ENA]
¡û
>W1610850497
LQAQ01000100
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
115652
115565
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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