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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47355 (30 seq.)
>A171001455
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1771358
1771442
+
Ser
GCT
-
¡û
>A171001725
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1902437
1902350
-
Ser
GCT
-
¡û
>A171003033
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
203233
203148
-
Ser
GCT
-
¡û
>A171004722
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
511051
511137
+
Ser
GCT
-
¡û
>A171005375
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
2165424
2165509
+
Ser
GCT
-
¡û
>A171006818
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
951517
951433
-
Ser
GCT
-
¡û
>WENV180345392
OBLN01000011
[OBLN] sediment metagenome; sediment
60101
60015
-
Ser
GCT
[ENA]
¢þ
>WENV180345962
OBLN01015255
[OBLN] sediment metagenome; sediment
1333
1248
-
Ser
GCT
[ENA]
¢þ
>WENV170006961
AMWB02071386
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
23899
23984
+
Ser
GCT
[ENA]
¢þ
>WENV170014862
AZIC01001367
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1602
1515
-
Ser
GCT
[ENA]
¢þ
>At1001
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1589860
1589776
-
Ser
GCT
[Ensembl]
¡û
>WENV170671819
LAHU01179837
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
47
132
+
Ser
GCT
[ENA]
¢þ
>W1910226841
FNCA01000011
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
80642
80557
-
Ser
GCT
[ENA]
¡û
>W1910228330
FNMU01000004
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
120618
120702
+
Ser
GCT
[ENA]
¡û
>W1910229839
FOHQ01000001
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
59124
59039
-
Ser
GCT
[ENA]
¡û
>W1910230580
FOUJ01000004
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
19503
19589
+
Ser
GCT
[ENA]
¡û
>W1910471819
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
277863
277947
+
Ser
GCT
[ENA]
¡û
>W1910575278
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
718322
718407
+
Ser
GCT
[ENA]
¡û
>W1910582985
JWTK01000004
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
207803
207887
+
Ser
GCT
[ENA]
¡û
>W1910672540
MCNQ01000004
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
137840
137756
-
Ser
GCT
[ENA]
¡û
>W1910783568
MPPA01000022
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
127754
127668
-
Ser
GCT
[ENA]
¡û
>W1911492129
OBDR01000003
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
127495
127411
-
Ser
GCT
[ENA]
¡û
>W1911581835
PGGK01000023
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
5002
5091
+
Ser
GCT
[ENA]
¡û
>W1911633753
PVBU01000003
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
85555
85639
+
Ser
GCT
[ENA]
¡û
>W1911653214
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1342147
1342063
-
Ser
GCT
[ENA]
¡û
>W1610000126
AADH02000002
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
130687
130599
-
Ser
GCT
[ENA]
¡û
>W1610032610
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1805798
1805711
-
Ser
GCT
[ENA]
¡û
>W1610919868
LSRU01000069
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
6671
6587
-
Ser
GCT
[ENA]
¡û
>W1610919919
LSRV01000075
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
10503
10418
-
Ser
GCT
[ENA]
¡û
>W1611052496
MAFX01000013
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
34876
34792
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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