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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47356 (29 seq.)
>A171002769
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1111815
1111728
-
Leu
GAG
-
¡û
>A171002770
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1111658
1111572
-
Leu
GAG
-
¡û
>A171005362
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
657244
657331
+
Leu
GAG
-
¡û
>A171005363
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
657413
657500
+
Leu
GAG
-
¡û
>WENV180298559
OBJA01422569
[OBJA] soil metagenome; sediment, water from around vicinity
97
12
-
Leu
GAG
[ENA]
¢þ
>WENV180345573
OBLN01000698
[OBLN] sediment metagenome; sediment
7529
7442
-
Leu
GAG
[ENA]
¢þ
>WENV180345574
OBLN01000698
[OBLN] sediment metagenome; sediment
7368
7281
-
Leu
GAG
[ENA]
¢þ
>At0958
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
27289
27376
+
Leu
GAG
[Ensembl]
¡û
>At0959
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
27449
27533
+
Leu
GAG
[Ensembl]
¡û
>WENV170699744
LGVF01644504
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
307
220
-
Leu
GAG
[ENA]
¢þ
>W1910226824
FNCA01000003
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
20497
20410
-
Leu
GAG
[ENA]
¡û
>W1910226825
FNCA01000003
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
20337
20250
-
Leu
GAG
[ENA]
¡û
>W1910229865
FOHQ01000007
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
112624
112711
+
Leu
GAG
[ENA]
¡û
>W1910229866
FOHQ01000007
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
112795
112882
+
Leu
GAG
[ENA]
¡û
>W1910230588
FOUJ01000006
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
57538
57451
-
Leu
GAG
[ENA]
¡û
>W1910230589
FOUJ01000006
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
57380
57293
-
Leu
GAG
[ENA]
¡û
>W1910575248
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
109477
109564
+
Leu
GAG
[ENA]
¡û
>W1910575249
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
109648
109735
+
Leu
GAG
[ENA]
¡û
>W1910575250
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
109819
109906
+
Leu
GAG
[ENA]
¡û
>W1910661869
MBKP01000036
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
11426
11513
+
Leu
GAG
[ENA]
¡û
>W1910661870
MBKP01000036
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
11586
11673
+
Leu
GAG
[ENA]
¡û
>W1911581825
PGGK01000009
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
63560
63647
+
Leu
GAG
[ENA]
¡û
>W1911581826
PGGK01000009
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
63749
63836
+
Leu
GAG
[ENA]
¡û
>W1911581827
PGGK01000009
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
81109
81196
+
Leu
CAG
[ENA]
¡û
>W1610000146
AADH02000012
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
14893
14980
+
Leu
GAG
[ENA]
¡û
>W1610000147
AADH02000012
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
15052
15140
+
Leu
GAG
[ENA]
¡û
>W1610032593
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
2199693
2199780
+
Leu
GAG
[ENA]
¡û
>W1610919922
LSRV01000078
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
5633
5720
+
Leu
GAG
[ENA]
¡û
>W1610919923
LSRV01000078
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
5791
5878
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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