This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47379 (124 seq.)
>A171001144
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2620254
2620170
-
Leu
CAG
-
¡û
>A171001289
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
416960
417044
+
Leu
CAG
-
¡û
>A171001597
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1614726
1614641
-
Leu
CAG
-
¡û
>A171002484
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
55431
55347
-
Leu
CAG
-
¡û
>A171002722
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1790353
1790269
-
Leu
CAG
-
¡û
>A171003046
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1646041
1646125
+
Leu
CAG
-
¡û
>A171003101
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2484931
2485015
+
Leu
CAG
-
¡û
>A171003159
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
980874
980958
+
Leu
CAG
-
¡û
>A171003496
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1752065
1751981
-
Leu
CAG
-
¡û
>A171003755
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
1096967
1096883
-
Leu
CAG
-
¡û
>A171004139
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1679543
1679627
+
Leu
CAG
-
¡û
>A171006961
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1542829
1542913
+
Leu
CAG
-
¡û
>A171007023
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
611507
611422
-
Leu
CAG
-
¡û
>WENV180318335
OBKM01000429
[OBKM] metagenome; water
16928
16844
-
Leu
CAG
[ENA]
¢þ
>WENV180318394
OBKM01000671
[OBKM] metagenome; water
13122
13037
-
Leu
CAG
[ENA]
¢þ
>WENV180318454
OBKM01000948
[OBKM] metagenome; water
7249
7164
-
Leu
CAG
[ENA]
¢þ
>WENV170008674
APHM01000355
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
143
58
-
Leu
CAG
[ENA]
¢þ
>WENV170008889
APHM01013215
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
475
560
+
Leu
CAG
[ENA]
¢þ
>WENV170679537
LFCJ01000015
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
74588
74675
+
Leu
CAG
[ENA]
¢þ
>WENV170679752
LFCJ01000262
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
25934
26021
+
Leu
CAG
[ENA]
¢þ
>WENV170680192
LFCJ01005572
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
97
13
-
Leu
CAG
[ENA]
¢þ
>WENV170680205
LFCJ01005880
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5494
5578
+
Leu
CAG
[ENA]
¢þ
>WENV170680207
LFCJ01005908
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
858
773
-
Leu
CAG
[ENA]
¢þ
>WENV170680288
LFCJ01007160
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1343
1427
+
Leu
CAG
[ENA]
¢þ
>WENV170680382
LFCJ01009941
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4407
4323
-
Leu
CAG
[ENA]
¢þ
>WENV170680456
LFCJ01011708
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3750
3666
-
Leu
CAG
[ENA]
¢þ
>WENV170681087
LFFM01000039
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
48532
48448
-
Leu
CAG
[ENA]
¢þ
>WENV170681139
LFFM01000108
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
41055
41139
+
Leu
CAG
[ENA]
¢þ
>WENV170681392
LFFM01000713
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2267
2351
+
Leu
CAG
[ENA]
¢þ
>WENV170681548
LFFM01001334
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13570
13654
+
Leu
CAG
[ENA]
¢þ
>WENV170681847
LFFM01003454
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5346
5262
-
Leu
CAG
[ENA]
¢þ
>WENV170702402
LKMJ01001739
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11189
11273
+
Leu
CAG
[ENA]
¢þ
>WENV170702842
LKMJ01004372
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10309
10393
+
Leu
CAG
[ENA]
¢þ
>WENV170702988
LKMJ01005300
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3055
3139
+
Leu
CAG
[ENA]
¢þ
>WENV170703204
LKMJ01007972
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3706
3619
-
Leu
CAG
[ENA]
¢þ
>WENV170703209
LKMJ01008014
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3817
3901
+
Leu
CAG
[ENA]
¢þ
>WENV170703388
LKMJ01010632
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7850
7934
+
Leu
CAG
[ENA]
¢þ
>WENV170703584
LKMJ01014033
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6473
6557
+
Leu
CAG
[ENA]
¢þ
>WENV170703682
LKMJ01015379
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3143
3227
+
Leu
CAG
[ENA]
¢þ
>WENV170704067
LKMJ01021792
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3603
3690
+
Leu
CAG
[ENA]
¢þ
>WENV170704108
LKMJ01022689
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2258
2174
-
Leu
CAG
[ENA]
¢þ
>PL191000878
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
374343
374427
+
Leu
CAG
[ENA]
¡û
>W1910006908
BBMP01000011
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
149350
149264
-
Leu
CAG
[ENA]
¡û
>W1910226905
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1004254
1004170
-
Leu
CAG
[ENA]
¡û
>W1910227088
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
961196
961111
-
Leu
CAG
[ENA]
¡û
>W1910227144
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
732567
732483
-
Leu
CAG
[ENA]
¡û
>W1910229323
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
538973
539057
+
Leu
CAG
[ENA]
¡û
>W1910229792
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
844599
844515
-
Leu
CAG
[ENA]
¡û
>W1910229893
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
215630
215714
+
Leu
CAG
[ENA]
¡û
>W1910229927
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
617574
617490
-
Leu
CAG
[ENA]
¡û
>W1910230254
FOKW01000009
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
113751
113835
+
Leu
CAG
[ENA]
¡û
>W1910230360
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
136425
136510
+
Leu
CAG
[ENA]
¡û
>W1910230445
FORO01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
81208
81292
+
Leu
CAG
[ENA]
¡û
>W1910230833
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1283569
1283485
-
Leu
CAG
[ENA]
¡û
>W1910282439
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
488989
489074
+
Leu
CAG
[ENA]
¡û
>W1910340453
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
982553
982638
+
Leu
CAG
[ENA]
¡û
>W1910340512
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
485717
485801
+
Leu
CAG
[ENA]
¡û
>W1910340528
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
149136
149220
+
Leu
CAG
[ENA]
¡û
>W1910568564
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
877560
877475
-
Leu
CAG
[ENA]
¡û
>W1910569055
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
70745
70661
-
Leu
CAG
[ENA]
¡û
>W1910572565
JMIP02000015
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
204044
204128
+
Leu
CAG
[ENA]
¡û
>W1910572723
JNCS01000008
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
116738
116654
-
Leu
CAG
[ENA]
¡û
>W1910575875
JROF01000009
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
73265
73349
+
Leu
CAG
[ENA]
¡û
>W1910646142
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1480156
1480072
-
Leu
CAG
[ENA]
¡û
>W1910657547
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
191734
191818
+
Leu
CAG
[ENA]
¡û
>W1910696312
MEIH01000411
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
19683
19598
-
Leu
CAG
[ENA]
¡û
>W1910826094
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
229144
229229
+
Leu
CAG
[ENA]
¡û
>W1911434000
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2219396
2219312
-
Leu
CAG
[ENA]
¡û
>W1911493144
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
816592
816508
-
Leu
CAG
[ENA]
¡û
>W1911591345
PKKI01000046
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
29877
29961
+
Leu
CAG
[ENA]
¡û
>W1911693745
QLVG01000035
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
13465
13380
-
Leu
CAG
[ENA]
¡û
>W1911696833
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
276258
276173
-
Leu
CAG
[ENA]
¡û
>W1911709870
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
792693
792608
-
Leu
CAG
[ENA]
¡û
>W1911709958
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
286490
286574
+
Leu
CAG
[ENA]
¡û
>W1911717831
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2849982
2849897
-
Leu
CAG
[ENA]
¡û
>W1911824358
QZWE01000023
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
6094
6008
-
Leu
CAG
[ENA]
¡û
>W1610002967
AEMG01000006
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
355071
354986
-
Leu
CAG
[ENA]
¡û
>W1610003597
AGCX01000202
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
2645
2730
+
Leu
CAG
[ENA]
¡û
>W1610004109
AGIM01000012
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
76409
76496
+
Leu
CAG
[ENA]
¡û
>W1610004142
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
90480
90564
+
Leu
CAG
[ENA]
¡û
>W1610005320
AJRK01000057
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
8632
8546
-
Leu
CAG
[ENA]
¡û
>W1610005389
AJVG01000027
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
10024
10111
+
Leu
CAG
[ENA]
¡û
>W1610011708
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
22806
22893
+
Leu
CAG
[ENA]
¡û
>W1610011867
AOHV01000037
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
48509
48594
+
Leu
CAG
[ENA]
¡û
>W1610011902
AOHW01000008
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
2727
2811
+
Leu
CAG
[ENA]
¡û
>W1610011932
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
139693
139777
+
Leu
CAG
[ENA]
¡û
>W1610011975
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
53618
53534
-
Leu
CAG
[ENA]
¡û
>W1610012057
AOHZ01000094
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
20975
20891
-
Leu
CAG
[ENA]
¡û
>W1610012140
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
46728
46644
-
Leu
CAG
[ENA]
¡û
>W1610012175
AOIC01000078
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
19018
19105
+
Leu
CAG
[ENA]
¡û
>W1610012228
AOID01000051
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
41925
42012
+
Leu
CAG
[ENA]
¡û
>W1610012294
AOII01000037
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
51929
51842
-
Leu
CAG
[ENA]
¡û
>W1610012326
AOIJ01000032
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
77699
77786
+
Leu
CAG
[ENA]
¡û
>W1610012392
AOIK01000028
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
22672
22585
-
Leu
CAG
[ENA]
¡û
>W1610012417
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
117763
117850
+
Leu
CAG
[ENA]
¡û
>W1610012458
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
116886
116973
+
Leu
CAG
[ENA]
¡û
>W1610012523
AOIN01000065
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
19441
19354
-
Leu
CAG
[ENA]
¡û
>W1610012550
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
21485
21398
-
Leu
CAG
[ENA]
¡û
>W1610012609
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
340075
340162
+
Leu
CAG
[ENA]
¡û
>W1610012660
AOIQ01000024
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
18132
18219
+
Leu
CAG
[ENA]
¡û
>W1610012695
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
210055
210139
+
Leu
CAG
[ENA]
¡û
>W1610012730
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
62362
62446
+
Leu
CAG
[ENA]
¡û
>W1610012788
AOIT01000039
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
11281
11368
+
Leu
CAG
[ENA]
¡û
>W1610014516
AOMB01000041
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
158381
158467
+
Leu
CAG
[ENA]
¡û
>W1610014560
AOMC01000152
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
25591
25505
-
Leu
CAG
[ENA]
¡û
>W1610014570
AOMD01000005
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
95422
95508
+
Leu
CAG
[ENA]
¡û
>W1610014624
AOME01000054
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
114757
114671
-
Leu
CAG
[ENA]
¡û
>W1610014691
AOMF01000171
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
50171
50257
+
Leu
CAG
[ENA]
¡û
>W1610018868
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
353913
353828
-
Leu
CAG
[ENA]
¡û
>W1610019040
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
495485
495401
-
Leu
CAG
[ENA]
¡û
>W1610029937
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
194407
194322
-
Leu
CAG
[ENA]
¡û
>W1610040566
BAFM01000026
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
23811
23725
-
Leu
CAG
[ENA]
¡û
>W1610046869
BBCV01000070
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
6329
6244
-
Leu
CAG
[ENA]
¡û
>W1610082962
CBMA010000005
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
20335
20422
+
Leu
CAG
[ENA]
¡û
>W1610083031
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
202728
202641
-
Leu
CAG
[ENA]
¡û
>W1610671360
LKCV01000007
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
21775
21691
-
Leu
CAG
[ENA]
¡û
>W1610671383
LKCV01000133
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
2672
2759
+
Leu
CAG
[ENA]
¡û
>W1610682143
LKMK01000125
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
97
13
-
Leu
CAG
[ENA]
¡û
>W1610682301
LKMR01000099
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
3143
3227
+
Leu
CAG
[ENA]
¡û
>W1610682535
LKNC01000018
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
13570
13654
+
Leu
CAG
[ENA]
¡û
>W1610682558
LKND01000003
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
48532
48448
-
Leu
CAG
[ENA]
¡û
>W1610682630
LKNF01000091
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
5346
5262
-
Leu
CAG
[ENA]
¡û
>W1610682642
LKNG01000001
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
41055
41139
+
Leu
CAG
[ENA]
¡û
>W1610925043
LTAZ01000004
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
713073
713158
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK