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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47393 (61 seq.)
>A171004699
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1211583
1211494
-
Leu
CAG
-
¡û
>A171004809
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1571014
1570929
-
Leu
CAG
-
¡û
>A171004965
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1432766
1432681
-
Leu
CAG
-
¡û
>A171005120
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1427774
1427689
-
Leu
CAG
-
¡û
>A171005166
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
3111284
3111199
-
Leu
CAG
-
¡û
>A171005203
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2448804
2448889
+
Leu
CAG
-
¡û
>A171005280
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1658181
1658095
-
Leu
CAG
-
¡û
>A171005294
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
147752
147837
+
Leu
CAG
-
¡û
>WENV180346718
OBLN01246211
[OBLN] sediment metagenome; sediment
110
197
+
Leu
CAG
[ENA]
¢þ
>WENV170008270
AMZC01006862
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
27
112
+
Leu
CAG
[ENA]
¢þ
>At1393
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4085009
4085093
+
Leu
CAG
[Ensembl]
¡û
>WENV170784361
MCHG01001279
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1326
1414
+
Leu
CAG
[ENA]
¢þ
>W1910569286
JJOS01000012
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
81721
81635
-
Leu
CAG
[ENA]
¡û
>W1910569336
JJOT01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
232905
232990
+
Leu
CAG
[ENA]
¡û
>W1910569437
JJOV01000016
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
7470
7557
+
Leu
CAG
[ENA]
¡û
>W1910569497
JJOW01000134
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
10640
10725
+
Leu
CAG
[ENA]
¡û
>W1910569562
JJOX01000078
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
10966
11051
+
Leu
CAG
[ENA]
¡û
>W1910569584
JJOY01000003
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
4458
4373
-
Leu
CAG
[ENA]
¡û
>W1910569676
JJOZ01000057
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
64212
64297
+
Leu
CAG
[ENA]
¡û
>W1910569718
JJPA01000200
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
10208
10122
-
Leu
CAG
[ENA]
¡û
>W1910569761
JJPB01000086
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
68700
68786
+
Leu
CAG
[ENA]
¡û
>W1910569799
JJPC01000033
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
33040
32954
-
Leu
CAG
[ENA]
¡û
>W1910569864
JJPD01000145
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
71632
71546
-
Leu
CAG
[ENA]
¡û
>W1910569937
JJPE01000168
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
71552
71466
-
Leu
CAG
[ENA]
¡û
>W1910569945
JJPF01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
36840
36926
+
Leu
CAG
[ENA]
¡û
>W1910570037
JJPG01000144
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
37521
37607
+
Leu
CAG
[ENA]
¡û
>W1910570053
JJPH01000022
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
36035
36121
+
Leu
CAG
[ENA]
¡û
>W1910570109
JJPI01000048
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
65410
65325
-
Leu
CAG
[ENA]
¡û
>W1910570169
JJPJ01000053
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
49499
49584
+
Leu
CAG
[ENA]
¡û
>W1910570237
JJPK01000113
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
48095
48180
+
Leu
CAG
[ENA]
¡û
>W1910570288
JJPL01000134
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
60531
60617
+
Leu
CAG
[ENA]
¡û
>W1910570346
JJPM01000339
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2301
2215
-
Leu
CAG
[ENA]
¡û
>W1910570406
JJPO01000010
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
22827
22742
-
Leu
CAG
[ENA]
¡û
>W1910570489
JJPP01000137
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
40289
40374
+
Leu
CAG
[ENA]
¡û
>W1910570578
JJPR01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
65505
65590
+
Leu
CAG
[ENA]
¡û
>W1910570697
JJPT01000164
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
85844
85759
-
Leu
CAG
[ENA]
¡û
>W1910570876
JJPX01000079
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
1502
1417
-
Leu
CAG
[ENA]
¡û
>W1910570928
JJPY01000064
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
65573
65658
+
Leu
CAG
[ENA]
¡û
>W1910571045
JJQA01000117
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
181845
181930
+
Leu
CAG
[ENA]
¡û
>W1910571065
JJQB01000029
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
66560
66645
+
Leu
CAG
[ENA]
¡û
>W1910571124
JJQC01000073
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
92562
92477
-
Leu
CAG
[ENA]
¡û
>W1910571192
JJQD01000158
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
52333
52419
+
Leu
CAG
[ENA]
¡û
>W1910571249
JJQE01000161
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
37565
37651
+
Leu
CAG
[ENA]
¡û
>W1910571335
JJQG01000116
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
44288
44203
-
Leu
CAG
[ENA]
¡û
>W1910571384
JJQH01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
15360
15275
-
Leu
CAG
[ENA]
¡û
>W1910571567
JJQL01000003
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
37277
37362
+
Leu
CAG
[ENA]
¡û
>W1910571662
JJQM01000126
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
4665
4750
+
Leu
CAG
[ENA]
¡û
>W1910571747
JJQO01000047
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
4665
4750
+
Leu
CAG
[ENA]
¡û
>W1910571828
JJQP01000201
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
2813
2898
+
Leu
CAG
[ENA]
¡û
>W1910571897
JJQQ01000171
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
48055
48140
+
Leu
CAG
[ENA]
¡û
>W1910572146
JJQV01000133
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
102340
102425
+
Leu
CAG
[ENA]
¡û
>W1910572169
JJQW01000059
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
3491
3576
+
Leu
CAG
[ENA]
¡û
>W1910572232
JJQX01000190
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
3487
3572
+
Leu
CAG
[ENA]
¡û
>W1910572267
JJQY01000086
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
10248
10333
+
Leu
CAG
[ENA]
¡û
>W1910572344
JJRA01000002
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
81147
81062
-
Leu
CAG
[ENA]
¡û
>W1910575057
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3544013
3544098
+
Leu
CAG
[ENA]
¡û
>W1910575059
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3717811
3717896
+
Leu
CAG
[ENA]
¡û
>W1910694812
MDTP02000252
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1326
1413
+
Leu
CAG
[ENA]
¡û
>W1610045106
BBBC01000039
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
21244
21159
-
Leu
CAG
[ENA]
¡û
>W1610045126
BBBC01000129
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
10332
10417
+
Pseudo
CAG
[ENA]
¡û
>W1610046917
BBCW01000088
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
4758
4672
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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