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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47396 (86 seq.)
>W131234678
AUKY01000054
Bacillota
Solobacterium moorei DSM 22971 [AUKY]
7382
7470
+
Ser
CGA
[ENA]
¡û
>WENV180007622
FLSA01128002
[FLSA] metagenome; saliva
55
143
+
Ser
CGA
[ENA]
¢þ
>WENV180009074
FLSB01306771
[FLSB] metagenome; saliva
37
125
+
Ser
CGA
[ENA]
¢þ
>WENV180705188
ODEJ01001395
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2333
2421
+
Ser
CGA
[ENA]
¢þ
>WENV180708320
ODFJ01000980
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6771
6683
-
Ser
CGA
[ENA]
¢þ
>WENV180719389
ODGJ01001178
[ODGJ] human metagenome; G_DNA_Tongue dorsum
6764
6676
-
Ser
CGA
[ENA]
¢þ
>WENV180722717
ODGM01013293
[ODGM] human metagenome; G_DNA_Palatine Tonsils
733
821
+
Ser
CGA
[ENA]
¢þ
>WENV180724892
ODGR01004434
[ODGR] human metagenome; G_DNA_Tongue dorsum
2884
2796
-
Ser
CGA
[ENA]
¢þ
>WENV180757295
ODHW01000184
[ODHW] human metagenome; G_DNA_Tongue dorsum
51357
51445
+
Ser
CGA
[ENA]
¢þ
>WENV180763982
ODIA01011479
[ODIA] human metagenome; G_DNA_Tongue dorsum
129
217
+
Ser
CGA
[ENA]
¢þ
>WENV180768618
ODIG01011870
[ODIG] human metagenome; G_DNA_Tongue dorsum
1662
1574
-
Ser
CGA
[ENA]
¢þ
>WENV180774256
ODIJ01014561
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2034
2122
+
Ser
CGA
[ENA]
¢þ
>WENV180776816
ODIK01156524
[ODIK] human metagenome; G_DNA_Tongue dorsum
58
146
+
Ser
CGA
[ENA]
¢þ
>WENV180779283
ODIN01001739
[ODIN] human metagenome; G_DNA_Throat
5239
5327
+
Ser
CGA
[ENA]
¢þ
>WENV180783756
ODIQ01024669
[ODIQ] human metagenome; G_DNA_Tongue dorsum
33
121
+
Ser
CGA
[ENA]
¢þ
>WENV180790661
ODIT01027183
[ODIT] human metagenome; G_DNA_Tongue dorsum
1086
998
-
Ser
CGA
[ENA]
¢þ
>WENV180792000
ODIW01000024
[ODIW] human metagenome; G_DNA_Tongue dorsum
159365
159453
+
Ser
CGA
[ENA]
¢þ
>WENV180794617
ODIZ01002171
[ODIZ] human metagenome; G_DNA_Tongue dorsum
2765
2677
-
Ser
CGA
[ENA]
¢þ
>WENV180802350
ODJE01001338
[ODJE] human metagenome; G_DNA_Tongue dorsum
6781
6693
-
Ser
CGA
[ENA]
¢þ
>WENV180806057
ODJH01001365
[ODJH] human metagenome; G_DNA_Tongue dorsum
1915
2003
+
Ser
CGA
[ENA]
¢þ
>WENV180807622
ODJI01004921
[ODJI] human metagenome; G_DNA_Tongue dorsum
1983
1895
-
Ser
CGA
[ENA]
¢þ
>WENV180815334
ODJP01000225
[ODJP] human metagenome; G_DNA_Tongue dorsum
44534
44622
+
Ser
CGA
[ENA]
¢þ
>WENV180819619
ODJR01000244
[ODJR] human metagenome; G_DNA_Tongue dorsum
7296
7208
-
Ser
CGA
[ENA]
¢þ
>WENV180821577
ODJS01021209
[ODJS] human metagenome; G_DNA_Tongue dorsum
827
739
-
Ser
CGA
[ENA]
¢þ
>WENV180830333
ODKB01001875
[ODKB] human metagenome; G_DNA_Tongue dorsum
1946
1858
-
Ser
CGA
[ENA]
¢þ
>WENV180853058
ODKW01024019
[ODKW] human metagenome; G_DNA_Tongue dorsum
121
33
-
Ser
CGA
[ENA]
¢þ
>WENV180854879
ODKX01014637
[ODKX] human metagenome; G_DNA_Tongue dorsum
2033
2121
+
Ser
CGA
[ENA]
¢þ
>WENV180861019
ODLE01000540
[ODLE] human metagenome; G_DNA_Tongue dorsum
20191
20279
+
Ser
CGA
[ENA]
¢þ
>WENV180864123
ODLH01011534
[ODLH] human metagenome; G_DNA_Tongue dorsum
255
167
-
Ser
CGA
[ENA]
¢þ
>WENV180866464
ODLJ01024277
[ODLJ] human metagenome; G_DNA_Tongue dorsum
763
675
-
Ser
CGA
[ENA]
¢þ
>WENV180872798
ODLP01000081
[ODLP] human metagenome; G_DNA_Tongue dorsum
6766
6678
-
Ser
CGA
[ENA]
¢þ
>WENV180878155
ODLV01018670
[ODLV] human metagenome; G_DNA_Tongue dorsum
88
1
-
Ser
CGA
[ENA]
¢þ
>WENV180880228
ODLZ01011187
[ODLZ] human metagenome; G_DNA_Tongue dorsum
2353
2441
+
Ser
CGA
[ENA]
¢þ
>WENV180883431
ODMC01005124
[ODMC] human metagenome; G_DNA_Tongue dorsum
3765
3853
+
Ser
CGA
[ENA]
¢þ
>WENV180891161
ODMO01072644
[ODMO] human metagenome; G_DNA_Tongue dorsum
253
165
-
Ser
CGA
[ENA]
¢þ
>WENV180897689
ODNI01056879
[ODNI] human metagenome; G_DNA_Tongue dorsum
121
209
+
Ser
CGA
[ENA]
¢þ
>WENV180897866
ODNI01104498
[ODNI] human metagenome; G_DNA_Tongue dorsum
104
16
-
Ser
CGA
[ENA]
¢þ
>WENV180900846
ODOJ01012596
[ODOJ] human metagenome; G_DNA_Tongue dorsum
352
264
-
Ser
CGA
[ENA]
¢þ
>WENV180902148
ODOK01020391
[ODOK] human metagenome; G_DNA_Tongue dorsum
111
199
+
Ser
CGA
[ENA]
¢þ
>WENV180916907
ODTD01002243
[ODTD] human metagenome; G_DNA_Tongue dorsum
74
162
+
Ser
CGA
[ENA]
¢þ
>WENV180920339
ODTH01003845
[ODTH] human metagenome; G_DNA_Tongue dorsum
5480
5392
-
Ser
CGA
[ENA]
¢þ
>WENV180929845
ODTN01018809
[ODTN] human metagenome; G_DNA_Tongue dorsum
99
187
+
Ser
CGA
[ENA]
¢þ
>WENV180931556
ODTP01005818
[ODTP] human metagenome; G_DNA_Tongue dorsum
4541
4629
+
Ser
CGA
[ENA]
¢þ
>WENV180949362
ODUG01014757
[ODUG] human metagenome; G_DNA_Tongue dorsum
820
732
-
Ser
CGA
[ENA]
¢þ
>WENV180952985
ODUI01005522
[ODUI] human metagenome; G_DNA_Tongue dorsum
3974
3886
-
Ser
CGA
[ENA]
¢þ
>WENV180954342
ODUJ01001817
[ODUJ] human metagenome; G_DNA_Tongue dorsum
6765
6677
-
Ser
CGA
[ENA]
¢þ
>WENV180959814
ODUM01003532
[ODUM] human metagenome; G_DNA_Tongue dorsum
3332
3420
+
Ser
CGA
[ENA]
¢þ
>WENV180967785
ODUT01003384
[ODUT] human metagenome; G_DNA_Tongue dorsum
3185
3097
-
Ser
CGA
[ENA]
¢þ
>WENV180978137
ODUZ01020765
[ODUZ] human metagenome; G_DNA_Tongue dorsum
115
203
+
Ser
CGA
[ENA]
¢þ
>WENV180985583
ODVJ01008613
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2328
2416
+
Ser
CGA
[ENA]
¢þ
>WENV180990669
ODVN01003156
[ODVN] human metagenome; G_DNA_Tongue dorsum
91
3
-
Ser
CGA
[ENA]
¢þ
>WENV181013615
ODWN01002015
[ODWN] human metagenome; G_DNA_Tongue dorsum
2324
2412
+
Ser
CGA
[ENA]
¢þ
>WENV181016912
ODWR01012448
[ODWR] human metagenome; G_DNA_Tongue dorsum
205
117
-
Ser
CGA
[ENA]
¢þ
>WENV181020149
ODWU01062622
[ODWU] human metagenome; G_DNA_Supragingival plaque
500
588
+
Ser
CGA
[ENA]
¢þ
>WENV181022019
ODWV01135490
[ODWV] human metagenome; G_DNA_Tongue dorsum
71
159
+
Ser
CGA
[ENA]
¢þ
>WENV181033298
ODXN01004698
[ODXN] human metagenome; G_DNA_Tongue dorsum
2464
2552
+
Ser
CGA
[ENA]
¢þ
>WENV181038541
ODXQ01002082
[ODXQ] human metagenome; G_DNA_Tongue dorsum
9437
9525
+
Ser
CGA
[ENA]
¢þ
>WENV181040803
ODXS01001170
[ODXS] human metagenome; G_DNA_Tongue dorsum
7132
7220
+
Ser
CGA
[ENA]
¢þ
>WENV181044942
ODXV01072379
[ODXV] human metagenome; G_DNA_Tongue dorsum
307
219
-
Ser
CGA
[ENA]
¢þ
>WENV181046165
ODXW01010713
[ODXW] human metagenome; G_DNA_Tongue dorsum
269
181
-
Ser
CGA
[ENA]
¢þ
>WENV181052078
ODYE01017220
[ODYE] human metagenome; G_DNA_Tongue dorsum
898
810
-
Ser
CGA
[ENA]
¢þ
>WENV181057837
ODYL01001433
[ODYL] human metagenome; G_DNA_Tongue dorsum
6780
6692
-
Ser
CGA
[ENA]
¢þ
>WENV181060315
ODYM01113494
[ODYM] human metagenome; G_DNA_Tongue dorsum
119
31
-
Ser
CGA
[ENA]
¢þ
>WENV181073609
OEAO01000593
[OEAO] human metagenome; G_DNA_Tongue dorsum
3663
3575
-
Ser
CGA
[ENA]
¢þ
>WENV181086016
OEAY01000034
[OEAY] human metagenome; G_DNA_Tongue dorsum
126650
126738
+
Ser
CGA
[ENA]
¢þ
>WENV181096339
OEBY01093168
[OEBY] human metagenome; G_DNA_Tongue dorsum
347
259
-
Ser
CGA
[ENA]
¢þ
>WENV181097837
OECA01034580
[OECA] human metagenome; G_DNA_Tongue dorsum
687
599
-
Ser
CGA
[ENA]
¢þ
>WENV181101866
OECT01000334
[OECT] human metagenome; G_DNA_Tongue dorsum
6771
6683
-
Ser
CGA
[ENA]
¢þ
>WENV181105871
OEED01022166
[OEED] human metagenome; G_DNA_Tongue dorsum
352
264
-
Ser
CGA
[ENA]
¢þ
>WENV181109404
OEEJ01043098
[OEEJ] human metagenome; G_DNA_Tongue dorsum
171
259
+
Ser
CGA
[ENA]
¢þ
>WENV181112244
OEEL01000295
[OEEL] human metagenome; G_DNA_Tongue dorsum
6771
6683
-
Ser
CGA
[ENA]
¢þ
>WENV181114162
OEEO01000173
[OEEO] human metagenome; G_DNA_Supragingival plaque
48571
48659
+
Ser
CGA
[ENA]
¢þ
>WENV181129512
OEFX01031868
[OEFX] human metagenome; G_DNA_Tongue dorsum
537
625
+
Ser
CGA
[ENA]
¢þ
>WENV181130052
OEFY01000531
[OEFY] human metagenome; G_DNA_Throat
7095
7183
+
Ser
CGA
[ENA]
¢þ
>WENV181139163
OEGN01003798
[OEGN] human metagenome; G_DNA_Tongue dorsum
113
201
+
Ser
CGA
[ENA]
¢þ
>WENV181141974
OEGT01043701
[OEGT] human metagenome; G_DNA_Throat
431
343
-
Ser
CGA
[ENA]
¢þ
>WENV181150103
OEHW01000473
[OEHW] human metagenome; G_DNA_Tongue dorsum
19096
19184
+
Ser
CGA
[ENA]
¢þ
>WENV181157862
OEIG01039567
[OEIG] human metagenome; G_DNA_Hard palate
188
100
-
Ser
CGA
[ENA]
¢þ
>WENV181176868
OEJR01060372
[OEJR] human metagenome; G_DNA_Saliva
241
153
-
Ser
CGA
[ENA]
¢þ
>WENV181979422
OHAF01001080
[OHAF] human gut metagenome; faeces
19758
19846
+
Ser
CGA
[ENA]
¢þ
>WENV181998135
OHAU01022009
[OHAU] human gut metagenome; faeces
110
198
+
Ser
CGA
[ENA]
¢þ
>WENV182411626
OIFP01007761
[OIFP] human gut metagenome; stool
213
125
-
Ser
CGA
[ENA]
¢þ
>WENV182880941
OKSA01002435
[OKSA] human gut metagenome; faeces
10337
10425
+
Ser
CGA
[ENA]
¢þ
>WENV183223447
OLQM01021917
[OLQM] human gut metagenome; faeces
353
441
+
Ser
CGA
[ENA]
¢þ
>W1810809664
QRWX01000002
Bacillota
Solobacterium moorei AF18-46 [QRWX]
627358
627446
+
Ser
CGA
[ENA]
¡û
>W11132981
AECQ01000004
Bacillota
Solobacterium moorei F0204 [AECQ]
6742
6654
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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