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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47403 (26 seq.)
>W141024296
AKKL01000012
Gammaproteobacteria
Providencia burhodogranariea DSM 19968 [AKKL]
149724
149811
+
Ser
TGA
[ENA]
¡û
>W141024358
AKKM01000005
Gammaproteobacteria
Providencia alcalifaciens Dmel2 [AKKM]
424119
424206
+
Ser
TGA
[ENA]
¡û
>W141221483
AZYZ01000036
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
89138
89225
+
Ser
TGA
[ENA]
¡û
>W141275250
JACS01000013
Gammaproteobacteria
Providencia alcalifaciens F90-2004 [JACS]
121074
121161
+
Ser
TGA
[ENA]
¡û
>WENV182809970
OJWU01000711
[OJWU] human gut metagenome; human gut
777
864
+
Ser
TGA
[ENA]
¢þ
>W141283215
JAKZ01000049
Gammaproteobacteria
Providencia alcalifaciens PAL-2 [JAKZ]
121132
121219
+
Ser
TGA
[ENA]
¡û
>W141283244
JALA01000004
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
236723
236810
+
Ser
TGA
[ENA]
¡û
>W141283339
JALB01000031
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
121198
121285
+
Ser
TGA
[ENA]
¡û
>W141283384
JALC01000017
Gammaproteobacteria
Providencia alcalifaciens R90-1475 [JALC]
647701
647614
-
Ser
TGA
[ENA]
¡û
>W141283442
JALD01000039
Gammaproteobacteria
Providencia alcalifaciens 205/92 [JALD]
27976
28063
+
Ser
TGA
[ENA]
¡û
>WENV183501891
OMGS01013519
[OMGS] human gut metagenome; human gut
545
458
-
Ser
TGA
[ENA]
¢þ
>C181084060
CP023536
Gammaproteobacteria
Providencia alcalifaciens FDAARGOS_408 [CP023536]
2580606
2580693
+
Ser
TGA
-
¡û
>C181195822
CP031123
Gammaproteobacteria
Providencia huaxiensis WCHPr000369 [CP031123]
350770
350857
+
Ser
TGA
-
¡û
>C181212376
LS483422
Gammaproteobacteria
Providencia heimbachae NCTC12003 [LS483422]
1818256
1818343
+
Ser
TGA
-
¡û
>C181215372
LS483467
Gammaproteobacteria
Providencia alcalifaciens NCTC10286 [LS483467]
2550093
2550006
-
Ser
TGA
-
¡û
>C191057234
CP028384
Gammaproteobacteria
Providencia heimbachae 99101 [CP028384]
1768858
1768945
+
Ser
TGA
-
¡û
>W09112437
ABXV01000054
Gammaproteobacteria
Providencia rustigianii DSM 4541 [ABXV]
100978
101065
+
Ser
TGA
[ENA]
¡û
>W09112498
ABXW01000062
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
135191
135278
+
Ser
TGA
[ENA]
¡û
>C191199220
LR134189
Gammaproteobacteria
Providencia rustigianii NCTC6933 [LR134189]
2302069
2301982
-
Ser
TGA
-
¡û
>C191210630
LR134396
Gammaproteobacteria
Providencia rustigianii NCTC8113 [LR134396]
2363694
2363607
-
Ser
TGA
-
¡û
>W1810376691
PXIC01000004
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
231404
231491
+
Ser
TGA
[ENA]
¡û
>W1511638739
LDOF01000066
Gammaproteobacteria
Moellerella wisconsensis GTA-1455 [LDOF]
15147
15060
-
Ser
TGA
[ENA]
¡û
>W1610419506
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
1265438
1265351
-
Ser
TGA
[ENA]
¡û
>W1610610204
LGAA01000018
Gammaproteobacteria
Moellerella wisconsensis ATCC 35017 [LGAA]
15834
15921
+
Ser
TGA
[ENA]
¡û
>W1610994932
LXEW01000049
Gammaproteobacteria
Providencia heimbachae ATCC 35613 [LXEW]
6608
6695
+
Ser
TGA
[ENA]
¡û
>W1710419242
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
1265438
1265351
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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