This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47415 (9 seq.)
>A171000482
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1706698
1706785
+
Leu
TAG
-
¡û
>A171000500
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1834232
1834145
-
Leu
GAG
-
¡û
>A171001871
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
851508
851595
+
Leu
TAG
-
¡û
>A171004042
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
998184
998271
+
Leu
TAG
-
¡û
>A171006374
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
531979
531892
-
Leu
GAG
-
¡û
>A171006471
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
983455
983542
+
Leu
TAG
-
¡û
>At1941
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
260446
260359
-
Leu
GAG
[Ensembl]
¡û
>WENV170676970
LDZS01003831
[LDZS] terrestrial metagenome; oil reservoir sample K3
955
868
-
Leu
TAG
[ENA]
¢þ
>W1610000725
ABSF01000011
Euryarchaeota
Thermococcus barophilus MP [ABSF]
115038
115125
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK