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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4742 (33 seq.)
>W1710801594
LJWZ01000096
Bacillota
Limosilactobacillus fermentum [LJWZ]
2428
2335
-
Ser
GGA
[ENA]
¡û
>W1711185555
LWNM01000115
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
938
845
-
Ser
GGA
[ENA]
¡û
>W1712106929
NIWV01000054
Bacillota
Limosilactobacillus fermentum [NIWV]
9930
9837
-
Ser
GGA
[ENA]
¡û
>C171057929
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
401508
401415
-
Ser
GGA
-
¡û
>C171123306
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
778351
778258
-
Ser
GGA
-
¡û
>WENV180335155
OBLF01183779
[OBLF] metagenome; feces
151
58
-
Ser
GGA
[ENA]
¢þ
>W141092507
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
1560278
1560185
-
Ser
GGA
[ENA]
¡û
>W141148210
AWXS01000170
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
14046
13953
-
Ser
GGA
[ENA]
¡û
>C08006077
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
1559701
1559608
-
Ser
GGA
[Ensembl]
¡û
>WENV183022890
OLFR01019230
[OLFR] human gut metagenome; human gut
366
272
-
Ser
GGA
[ENA]
¢þ
>C181004050
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
1431546
1431453
-
Ser
GGA
-
¡û
>C181196734
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
993731
993638
-
Ser
GGA
-
¡û
>C191012456
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1753115
1753208
+
Ser
GGA
-
¡û
>C191119227
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
1401614
1401707
+
Ser
GGA
-
¡û
>W1910181274
BJLV01000049
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
5
98
+
Ser
GGA
[ENA]
¡û
>W1910374055
FUHY01000047
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
1006
913
-
Ser
GGA
[ENA]
¡û
>W1910954324
NJPQ01000076
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
1028
935
-
Ser
GGA
[ENA]
¡û
>W1810090659
PGGI01000071
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
131
224
+
Ser
GGA
[ENA]
¡û
>W1810223763
POTQ01000006
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
79210
79117
-
Ser
GGA
[ENA]
¡û
>W1810297079
PTLW01000045
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810489185
QAZV01000097
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
1048
955
-
Ser
GGA
[ENA]
¡û
>W1810705627
QMJL01000107
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
1148
1055
-
Ser
GGA
[ENA]
¡û
>W1810811220
QRYA01000044
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
51
144
+
Ser
GGA
[ENA]
¡û
>W1511567800
LAIK01000001
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
217046
216953
-
Ser
GGA
[ENA]
¡û
>W1511589505
LBDH01000003
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
17285
17378
+
Ser
GGA
[ENA]
¡û
>C161077694
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
2419843
2419936
+
Ser
GGA
-
¡û
>W1610036601
AZFK01000070
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
1093
1000
-
Ser
GGA
[ENA]
¡û
>W1610083163
CBUR010000026
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
13298
13205
-
Ser
GGA
[ENA]
¡û
>W1610527944
JQAU01000043
Bacillota
Limosilactobacillus fermentum [JQAU]
61
154
+
Ser
GGA
[ENA]
¡û
>W1610665551
LJWZ01000096
Bacillota
Limosilactobacillus fermentum [LJWZ]
2428
2335
-
Ser
GGA
[ENA]
¡û
>W1710033640
AZFK01000070
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
1093
1000
-
Ser
GGA
[ENA]
¡û
>W1710088283
CBUR010000026
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
13298
13205
-
Ser
GGA
[ENA]
¡û
>W1710629575
JQAU01000043
Bacillota
Limosilactobacillus fermentum [JQAU]
61
154
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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