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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474506 (40 seq.)
>C171067983
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
1865448
1865523
+
Gly
GCC
-
¡û
>C171067985
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
1865761
1865836
+
Gly
GCC
-
¡û
>C171067994
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2037014
2037089
+
Gly
GCC
-
¡û
>WENV180052821
MPLU02327908
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
496
571
+
Gly
GCC
[ENA]
¢þ
>WENV182541635
OJAU01000190
[OJAU] seawater metagenome; Sea water
4045
4120
+
Gly
GCC
[ENA]
¢þ
>WENV182542022
OJAV01000356
[OJAV] seawater metagenome; Sea water
17353
17278
-
Gly
GCC
[ENA]
¢þ
>WENV182542298
OJAY01000021
[OJAY] seawater metagenome; Sea water
82527
82602
+
Gly
GCC
[ENA]
¢þ
>WENV182544014
OJBE01000008
[OJBE] seawater metagenome; Sea water
181987
181912
-
Gly
GCC
[ENA]
¢þ
>WENV182544024
OJBE01000015
[OJBE] seawater metagenome; Sea water
97811
97886
+
Gly
GCC
[ENA]
¢þ
>WENV182546579
OJBP01000252
[OJBP] seawater metagenome; Sea water
726
801
+
Gly
GCC
[ENA]
¢þ
>WENV182546960
OJBR01000023
[OJBR] seawater metagenome; Sea water
88712
88787
+
Gly
GCC
[ENA]
¢þ
>WENV182547018
OJBR01000140
[OJBR] seawater metagenome; Sea water
33336
33261
-
Gly
GCC
[ENA]
¢þ
>WENV182549471
OJBY01001257
[OJBY] seawater metagenome; Sea water
3292
3367
+
Gly
GCC
[ENA]
¢þ
>WENV182549795
OJBZ01000040
[OJBZ] seawater metagenome; Sea water
18293
18368
+
Gly
GCC
[ENA]
¢þ
>WENV182549843
OJBZ01000117
[OJBZ] seawater metagenome; Sea water
26803
26878
+
Gly
GCC
[ENA]
¢þ
>WENV182555786
OJDD01000779
[OJDD] seawater metagenome; Sea water
69
144
+
Gly
GCC
[ENA]
¢þ
>WENV182557448
OJDK01000006
[OJDK] seawater metagenome; Sea water
87432
87507
+
Gly
GCC
[ENA]
¢þ
>WENV182559533
OJDQ01000085
[OJDQ] seawater metagenome; Sea water
33807
33882
+
Gly
GCC
[ENA]
¢þ
>WENV182562174
OJDZ01000019
[OJDZ] seawater metagenome; Sea water
10396
10471
+
Gly
GCC
[ENA]
¢þ
>WENV182562186
OJDZ01000045
[OJDZ] seawater metagenome; Sea water
62096
62171
+
Gly
GCC
[ENA]
¢þ
>WENV182570673
OJFE01001423
[OJFE] seawater metagenome; Sea water
1221
1146
-
Gly
GCC
[ENA]
¢þ
>WENV183055137
OLGX01000014
[OLGX] seawater metagenome; Sea water
143365
143290
-
Gly
GCC
[ENA]
¢þ
>WENV183055163
OLGX01000035
[OLGX] seawater metagenome; Sea water
26015
25940
-
Gly
GCC
[ENA]
¢þ
>WENV183057249
OLHL01000014
[OLHL] seawater metagenome; Sea water
79655
79580
-
Gly
GCC
[ENA]
¢þ
>WENV183057295
OLHL01000235
[OLHL] seawater metagenome; Sea water
12353
12428
+
Gly
GCC
[ENA]
¢þ
>WENV183059583
OLHV01000027
[OLHV] seawater metagenome; Sea water
101245
101170
-
Gly
GCC
[ENA]
¢þ
>WENV183059596
OLHV01000038
[OLHV] seawater metagenome; Sea water
26015
25940
-
Gly
GCC
[ENA]
¢þ
>WENV183522079
OMOM01000048
[OMOM] seawater metagenome; Sea water
79784
79709
-
Gly
GCC
[ENA]
¢þ
>WENV183803356
PVBE010837641
[PVBE] marine metagenome; water
437
512
+
Gly
GCC
[ENA]
¢þ
>WENV170016345
AZIK01000769
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
239
314
+
Gly
GCC
[ENA]
¢þ
>WENV170016348
AZIK01000769
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
253937
253862
-
Gly
GCC
[ENA]
¢þ
>WENV170564918
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
26723
26648
-
Gly
GCC
[ENA]
¢þ
>WENV170564935
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11679
11754
+
Gly
GCC
[ENA]
¢þ
>WENV170564937
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11992
12067
+
Gly
GCC
[ENA]
¢þ
>C151013078
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1706825
1706900
+
Gly
GCC
[Ensembl]
¡û
>C151013080
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1707138
1707213
+
Gly
GCC
[Ensembl]
¡û
>C151013089
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1856575
1856650
+
Gly
GCC
[Ensembl]
¡û
>C131021008
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
2067192
2067117
-
Gly
GCC
[Ensembl]
¡û
>C131021010
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
2066879
2066804
-
Gly
GCC
[Ensembl]
¡û
>C131021019
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1898986
1898911
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK