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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47460 (61 seq.)
>W1711187541
LWPO01000072
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
89330
89241
-
Ser
GGA
[ENA]
¡û
>W1711680269
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
44182
44093
-
Ser
GGA
[ENA]
¡û
>W1711680270
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
43895
43806
-
Ser
GGA
[ENA]
¡û
>W1712109973
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
3127098
3127009
-
Ser
GGA
[ENA]
¡û
>W1712109974
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
3126135
3126046
-
Ser
GGA
[ENA]
¡û
>WENV180138051
OATP01003829
[OATP] human gut metagenome; faeces
2948
2859
-
Ser
GGA
[ENA]
¢þ
>WENV180143637
OATY01000019
[OATY] human gut metagenome; faeces
68672
68761
+
Ser
GGA
[ENA]
¢þ
>WENV180143638
OATY01000019
[OATY] human gut metagenome; faeces
69508
69597
+
Ser
GGA
[ENA]
¢þ
>WENV180211772
OBAM01022196
[OBAM] human gut metagenome; human gut
630
541
-
Ser
GGA
[ENA]
¢þ
>WENV181711068
OGPO01008487
[OGPO] human gut metagenome; faeces
1647
1558
-
Ser
GGA
[ENA]
¢þ
>W141264892
CCES01000028
Gammaproteobacteria
Serratia symbiotica [CCES]
207180
207091
-
Ser
GGA
[ENA]
¡û
>WENV183355712
OLXD01018239
[OLXD] human gut metagenome; feces
939
850
-
Ser
GGA
[ENA]
¢þ
>WENV183357183
OLXF01011410
[OLXF] human gut metagenome; feces
1051
962
-
Ser
GGA
[ENA]
¢þ
>WENV183370980
OLXV01003768
[OLXV] human gut metagenome; feces
869
780
-
Ser
GGA
[ENA]
¢þ
>W141350066
JCKH01000018
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
186268
186179
-
Ser
GGA
[ENA]
¡û
>W141350067
JCKH01000018
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
185445
185356
-
Ser
GGA
[ENA]
¡û
>WENV183521762
OMNU01025923
[OMNU] human gut metagenome; feces
878
789
-
Ser
GGA
[ENA]
¢þ
>C181002175
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1943642
1943553
-
Ser
GGA
-
¡û
>C181002176
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1942802
1942713
-
Ser
GGA
-
¡û
>C181055093
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1959065
1958976
-
Ser
GGA
-
¡û
>C181055094
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1958232
1958143
-
Ser
GGA
-
¡û
>C191008134
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
1113549
1113460
-
Ser
GGA
-
¡û
>C191152040
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1975690
1975601
-
Ser
GGA
-
¡û
>C191152041
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1974867
1974778
-
Ser
GGA
-
¡û
>W1910211907
FMIQ01000006
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
305809
305720
-
Ser
GGA
[ENA]
¡û
>W1910211908
FMIQ01000006
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
303721
303632
-
Ser
GGA
[ENA]
¡û
>W1911179137
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
976428
976339
-
Ser
GGA
[ENA]
¡û
>W1911179138
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
975595
975506
-
Ser
GGA
[ENA]
¡û
>W1911397609
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3635057
3635146
+
Ser
GGA
[ENA]
¡û
>W1911397610
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3637101
3637190
+
Ser
GGA
[ENA]
¡û
>W1810032575
BGWW01000017
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
36325
36236
-
Ser
GGA
[ENA]
¡û
>W1810032576
BGWW01000017
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
35492
35403
-
Ser
GGA
[ENA]
¡û
>C151057786
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
2103478
2103389
-
Ser
GGA
[Ensembl]
¡û
>C151057787
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
2102655
2102566
-
Ser
GGA
[Ensembl]
¡û
>W11113865
ADCU01000002
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
102045
101956
-
Ser
GGA
[ENA]
¡û
>W11113866
ADCU01000002
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
101212
101123
-
Ser
GGA
[ENA]
¡û
>W1511358098
JRWU01000002
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
186235
186324
+
Ser
GGA
[ENA]
¡û
>W1511358099
JRWU01000002
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
186567
186656
+
Ser
GGA
[ENA]
¡û
>W1511399522
JTET01000008
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
518387
518476
+
Ser
GGA
[ENA]
¡û
>W1511399523
JTET01000008
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
519225
519314
+
Ser
GGA
[ENA]
¡û
>W1511399591
JTEU02000003
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
123720
123631
-
Ser
GGA
[ENA]
¡û
>W1511399592
JTEU02000003
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
122887
122798
-
Ser
GGA
[ENA]
¡û
>W1511478135
JWGZ01000025
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
165982
165893
-
Ser
GGA
[ENA]
¡û
>W1511478136
JWGZ01000025
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
165149
165060
-
Ser
GGA
[ENA]
¡û
>W11141520
AENX01000009
Gammaproteobacteria
Serratia symbiotica str. Tucson [AENX]
7997
8086
+
Ser
GGA
[ENA]
¡û
>W1511586350
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
95954
96043
+
Ser
GGA
[ENA]
¡û
>W1511586351
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
98047
98136
+
Ser
GGA
[ENA]
¡û
>W1511586457
LAZG01000020
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
5702
5791
+
Ser
GGA
[ENA]
¡û
>W1511586458
LAZG01000020
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
6535
6624
+
Ser
GGA
[ENA]
¡û
>C161065237
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3607490
3607579
+
Ser
GGA
-
¡û
>C161065238
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3608324
3608413
+
Ser
GGA
-
¡û
>C161074230
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2073396
2073307
-
Ser
GGA
-
¡û
>C161074231
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2072573
2072484
-
Ser
GGA
-
¡û
>C161086849
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4126013
4126102
+
Ser
GGA
-
¡û
>C161086850
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4126845
4126934
+
Ser
GGA
-
¡û
>W121008382
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
199138
199227
+
Ser
GGA
[ENA]
¡û
>W121008383
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
199971
200060
+
Ser
GGA
[ENA]
¡û
>W1610994664
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
162315
162404
+
Ser
GGA
[ENA]
¡û
>W1610994665
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
163162
163251
+
Ser
GGA
[ENA]
¡û
>W1610994942
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
101844
101933
+
Ser
GGA
[ENA]
¡û
>W1610994943
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
102667
102756
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK