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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47471 (72 seq.)
>W1711318290
MAYF01000069
Bacteroidota
Chryseobacterium contaminans [MAYF]
2206
2295
+
Ser
GGA
[ENA]
¡û
>W1711318420
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
249951
249862
-
Ser
GGA
[ENA]
¡û
>W1711505112
MKVE01000019
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
45969
46058
+
Ser
GGA
[ENA]
¡û
>PL171000972
CP013294
Bacteroidetes
Chryseobacterium sp. IHB B 17019 plasmid:pAR01
3190
3277
+
Ser
GGA
[ENA]
¡û
>WENV180007833
FLSB01000158
[FLSB] metagenome; saliva
49428
49341
-
Ser
GGA
[ENA]
¢þ
>WENV180283813
OBID01003507
[OBID] metagenome; sludge
345
258
-
Ser
GGA
[ENA]
¢þ
>WENV180758938
ODHY01000011
[ODHY] human metagenome; G_DNA_Buccal mucosa
88703
88790
+
Ser
GGA
[ENA]
¢þ
>WENV180794050
ODIY01000702
[ODIY] human metagenome; G_DNA_Buccal mucosa
2437
2350
-
Ser
GGA
[ENA]
¢þ
>WENV180863032
ODLF01077875
[ODLF] human metagenome; G_DNA_Buccal mucosa
92
179
+
Ser
GGA
[ENA]
¢þ
>WENV180864823
ODLI01000066
[ODLI] human metagenome; G_DNA_Buccal mucosa
1413
1500
+
Ser
GGA
[ENA]
¢þ
>WENV180937022
ODTV01005321
[ODTV] human metagenome; G_DNA_Buccal mucosa
782
695
-
Ser
GGA
[ENA]
¢þ
>WENV180947468
ODUF01008103
[ODUF] human metagenome; G_DNA_Supragingival plaque
290
377
+
Ser
GGA
[ENA]
¢þ
>WENV181006648
ODWA01076542
[ODWA] human metagenome; G_DNA_Buccal mucosa
313
226
-
Ser
GGA
[ENA]
¢þ
>WENV181027618
ODXD01016211
[ODXD] human metagenome; G_DNA_Buccal mucosa
415
328
-
Ser
GGA
[ENA]
¢þ
>WENV181167750
OEIU01068060
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
369
456
+
Ser
GGA
[ENA]
¢þ
>W141168460
AXUZ01000018
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
141089
141178
+
Ser
GGA
[ENA]
¡û
>WENV181834701
OGVG01000028
[OGVG] freshwater metagenome; freshwater
13801
13888
+
Ser
GGA
[ENA]
¢þ
>W141233137
BAVL01000016
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
7303
7214
-
Ser
GGA
[ENA]
¡û
>WENV170010172
APMI01010163
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9465
9554
+
Ser
GGA
[ENA]
¢þ
>WENV170011498
APMI01069640
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
863
950
+
Ser
GGA
[ENA]
¢þ
>WENV170011761
APMI01089128
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
863
950
+
Ser
GGA
[ENA]
¢þ
>C181056682
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
5044492
5044405
-
Ser
GGA
-
¡û
>C181092495
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
262168
262081
-
Ser
GGA
-
¡û
>C191111274
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
133191
133278
+
Ser
GGA
-
¡û
>C191112496
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
468308
468221
-
Ser
GGA
-
¡û
>C191112901
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3651120
3651207
+
Ser
GGA
-
¡û
>C191115635
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1465774
1465861
+
Ser
GGA
-
¡û
>C191115765
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
4128640
4128553
-
Ser
GGA
-
¡û
>C191116238
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4421542
4421455
-
Ser
GGA
-
¡û
>C191116321
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4169628
4169541
-
Ser
GGA
-
¡û
>C191116416
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2191865
2191778
-
Ser
GGA
-
¡û
>C191204288
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4585908
4585821
-
Ser
GGA
-
¡û
>C191210024
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1215338
1215251
-
Ser
GGA
-
¡û
>C191218957
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4172616
4172529
-
Ser
GGA
-
¡û
>C191219150
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
3405048
3404961
-
Ser
GGA
-
¡û
>W09126984
ACKQ01000051
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
105206
105295
+
Ser
GGA
[ENA]
¡û
>W141802116
JPEQ01000015
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
48684
48773
+
Ser
GGA
[ENA]
¡û
>W1910184824
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
82512
82599
+
Ser
GGA
[ENA]
¡û
>W1911218427
NRQS01000009
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
14401
14314
-
Ser
GGA
[ENA]
¡û
>W1911218484
NRQT01000010
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
159245
159332
+
Ser
GGA
[ENA]
¡û
>W1911586408
PIZV01000065
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
13924
14011
+
Ser
GGA
[ENA]
¡û
>W1911701209
QNUE01000006
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
178674
178587
-
Ser
GGA
[ENA]
¡û
>W1911701289
QNUF01000028
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
44410
44323
-
Ser
GGA
[ENA]
¡û
>W1911701964
QNVV01000011
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
11029
10942
-
Ser
GGA
[ENA]
¡û
>W1810090034
PGFD01000003
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
336286
336373
+
Ser
GGA
[ENA]
¡û
>W1810234091
PPED02000007
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
28762
28675
-
Ser
GGA
[ENA]
¡û
>W1810304693
PTPZ01000001
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
106311
106224
-
Ser
GGA
[ENA]
¡û
>W1810538594
QDFZ01000008
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
92135
92048
-
Ser
GGA
[ENA]
¡û
>W1810609250
QGTV01000018
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
7163
7076
-
Ser
GGA
[ENA]
¡û
>W1810860727
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2649192
2649279
+
Ser
GGA
[ENA]
¡û
>C151002630
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1310221
1310132
-
Ser
GGA
[Ensembl]
¡û
>C151062230
CP009928
Bacteroidota
Chryseobacterium gallinarum DSM 27622 [CP009928]
2715917
2715828
-
Ser
GGA
[Ensembl]
¡û
>W1511433332
JUHD01000011
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
37724
37813
+
Ser
GGA
[ENA]
¡û
>W1511587161
LAZY01000053
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
2545
2458
-
Ser
GGA
[ENA]
¡û
>W1511685215
LFNE01000014
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
12483
12572
+
Ser
GGA
[ENA]
¡û
>C161055096
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
353961
353874
-
Ser
GGA
[Ensembl]
¡û
>W1610205648
FCNN01000147
Bacteroidota
Chryseobacterium indologenes [FCNN]
10181
10270
+
Ser
GGA
[ENA]
¡û
>W1610436661
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
169382
169471
+
Ser
GGA
[ENA]
¡û
>W1611061633
MAYF01000069
Bacteroidota
Chryseobacterium contaminans [MAYF]
2206
2295
+
Ser
GGA
[ENA]
¡û
>W1611061763
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
249951
249862
-
Ser
GGA
[ENA]
¡û
>W1710207149
FCNN01000147
Bacteroidota
Chryseobacterium indologenes [FCNN]
10181
10270
+
Ser
GGA
[ENA]
¡û
>W1710436397
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
169382
169471
+
Ser
GGA
[ENA]
¡û
>W1710514900
FNBH01000002
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
36251
36162
-
Ser
GGA
[ENA]
¡û
>W1710518828
FNEG01000007
Bacteroidota
Chryseobacterium jejuense [FNEG]
89292
89203
-
Ser
GGA
[ENA]
¡û
>W1710522367
FNHD01000004
Bacteroidota
Chryseobacterium taihuense [FNHD]
38651
38562
-
Ser
GGA
[ENA]
¡û
>W1710526603
FNKL01000001
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
807131
807220
+
Ser
GGA
[ENA]
¡û
>W1710554870
FOIU01000003
Bacteroidota
Chryseobacterium wanjuense [FOIU]
414599
414686
+
Ser
GGA
[ENA]
¡û
>W1710565791
FORL01000010
Bacteroidota
Chryseobacterium indologenes [FORL]
19037
18948
-
Ser
GGA
[ENA]
¡û
>W1710591126
FRBM01000011
Bacteroidota
Chryseobacterium contaminans [FRBM]
22167
22078
-
Ser
GGA
[ENA]
¡û
>W1710596327
FTMM01000009
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
113139
113226
+
Ser
GGA
[ENA]
¡û
>W1710599102
FTOL01000009
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
164303
164392
+
Ser
GGA
[ENA]
¡û
>W1710606045
FWXM01000005
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
159299
159388
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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