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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.475701 (50 seq.)
>W1712036156
NFHH01000076
Bacillota
Blautia sp. An81 [NFHH]
468
543
+
Ala
TGC
[ENA]
¡û
>W1712036158
NFHH01000077
Bacillota
Blautia sp. An81 [NFHH]
243
168
-
Ala
TGC
[ENA]
¡û
>WENV180123498
OASW01008858
[OASW] human gut metagenome; faeces
61
134
+
Ala
TGC
[ENA]
¢þ
>WENV180124666
OASX01062912
[OASX] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¢þ
>WENV180138688
OATQ01002118
[OATQ] human gut metagenome; faeces
414
487
+
Ala
TGC
[ENA]
¢þ
>WENV180140352
OATT01060936
[OATT] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¢þ
>WENV180149274
OAUK01045107
[OAUK] human gut metagenome; faeces
115
188
+
Ala
TGC
[ENA]
¢þ
>WENV180162592
OAVG01035962
[OAVG] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¢þ
>WENV180306863
OBJP01017347
[OBJP] human gut metagenome; human gut
338
411
+
Ala
TGC
[ENA]
¢þ
>WENV180308002
OBJQ01013335
[OBJQ] human gut metagenome; human gut
174
247
+
Ala
TGC
[ENA]
¢þ
>WENV180454395
OBXM01036338
[OBXM] human gut metagenome; faeces
169
241
+
Ala
TGC
[ENA]
¢þ
>WENV180458298
OBXV01009420
[OBXV] human gut metagenome; faeces
226
299
+
Ala
TGC
[ENA]
¢þ
>WENV180678121
OCVV011878416
[OCVV] gut metagenome; gut
42
114
+
Ala
TGC
[ENA]
¢þ
>WENV180678123
OCVV011878416
[OCVV] gut metagenome; gut
42
114
+
Ala
TGC
[ENA]
¢þ
>WENV181184034
OEJW01037777
[OEJW] human metagenome; G_DNA_Stool
377
449
+
Ala
TGC
[ENA]
¢þ
>WENV181199286
OERG01011042
[OERG] metagenome; Caecal content
402
329
-
Ala
TGC
[ENA]
¢þ
>WENV181200686
OERL01002523
[OERL] metagenome; Caecal content
475
548
+
Ala
TGC
[ENA]
¢þ
>WENV181917341
OGYG01008956
[OGYG] human gut metagenome; faeces
1903
1831
-
Ala
TGC
[ENA]
¢þ
>WENV182622079
OJKJ01006107
[OJKJ] metagenome; faeces
561
634
+
Ala
TGC
[ENA]
¢þ
>WENV182622142
OJKJ01007904
[OJKJ] metagenome; faeces
1393
1321
-
Ala
TGC
[ENA]
¢þ
>WENV183086683
OLJF01072645
[OLJF] metagenome; faeces
34
107
+
Ala
TGC
[ENA]
¢þ
>WENV183101259
OLNG01017336
[OLNG] human gut metagenome; faeces
91
163
+
Ala
TGC
[ENA]
¢þ
>WENV183135123
OLOD01024080
[OLOD] human gut metagenome; faeces
87
160
+
Ala
TGC
[ENA]
¢þ
>WENV183168366
OLOZ01012985
[OLOZ] human gut metagenome; faeces
1919
1846
-
Ala
TGC
[ENA]
¢þ
>WENV183290876
OLSH01011088
[OLSH] human gut metagenome; faeces
551
478
-
Ala
TGC
[ENA]
¢þ
>WENV183527959
ONZW01014737
[ONZW] human gut metagenome; human gut
341
414
+
Ala
TGC
[ENA]
¢þ
>WENV183557914
OOBP01024177
[OOBP] human gut metagenome; human gut
102
175
+
Ala
TGC
[ENA]
¢þ
>WENV183612091
OODT01005861
[OODT] human gut metagenome; human gut
767
840
+
Ala
TGC
[ENA]
¢þ
>WENV170005602
AMCI01008305
[AMCI] gut metagenome; fecal sample from gut
99
26
-
Ala
TGC
[ENA]
¢þ
>WENV170638624
JFBN01500787
[JFBN] chicken gut metagenome; ceca of Broiler chicken
94
21
-
Ala
TGC
[ENA]
¢þ
>C181064423
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
759691
759764
+
Ala
TGC
-
¡û
>C181064445
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
2786270
2786197
-
Ala
TGC
-
¡û
>C191147555
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
6000737
6000665
-
Ala
TGC
-
¡û
>C191147577
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
753736
753662
-
Ala
TGC
-
¡û
>W09113667
ABYU02000028
Bacillota
Blautia hansenii DSM 20583 [ABYU]
353
426
+
Ala
TGC
[ENA]
¡û
>W1911180286
NQOF01000026
Bacillota
Blautia hominis KB1 [NQOF]
336
264
-
Ala
TGC
[ENA]
¡û
>W1911532833
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
2825646
2825719
+
Ala
TGC
[ENA]
¡û
>W1911532879
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1003985
1003912
-
Ala
TGC
[ENA]
¡û
>W1911532882
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
862351
862278
-
Ala
TGC
[ENA]
¡û
>W1810252158
PQGC01000691
Bacillota
Lactonifactor longoviformis DSM 17459 [PQGC]
311
383
+
Ala
TGC
[ENA]
¡û
>W1810862834
QTUU01000009
Bacillota
Firmicutes bacterium AM10-47 [QTUU]
149
76
-
Ala
TGC
[ENA]
¡û
>W1810883192
QULP01000035
Bacillota
Firmicutes bacterium OM04-13BH [QULP]
377
450
+
Ala
TGC
[ENA]
¡û
>W11105876
ACTV01000014
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
101
28
-
Ala
TGC
[ENA]
¡û
>W1511577950
LARA01000079
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
482
409
-
Ala
TGC
[ENA]
¡û
>W1511579311
LARB01000594
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
393
466
+
Ala
TGC
[ENA]
¡û
>W1511579929
LARH01000086
Bacillota
Carnobacterium sp. N15.MGS-207 [LARH]
524
597
+
Ala
TGC
[ENA]
¡û
>W1511580071
LARI01000075
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
937
1010
+
Ala
TGC
[ENA]
¡û
>W1511580190
LARI01000168
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
342
269
-
Ala
TGC
[ENA]
¡û
>C161087314
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
198393
198465
+
Ala
TGC
[Ensembl]
¡û
>C161087348
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
3598488
3598415
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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