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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.476278 (44 seq.)
>W1710860327
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2225215
2225290
+
Lys
CTT
[ENA]
¡û
>W1710872346
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
382341
382266
-
Lys
CTT
[ENA]
¡û
>W1710873983
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
44787
44862
+
Lys
CTT
[ENA]
¡û
>WENV180016209
FSUF01000947
[FSUF] metagenome; soil
2375
2448
+
Lys
CTT
[ENA]
¢þ
>WENV180016684
FSVT01000123
[FSVT] metagenome; soil
1989
2062
+
Lys
CTT
[ENA]
¢þ
>WENV180017273
FSWR01000048
[FSWR] metagenome; soil
32358
32433
+
Lys
CTT
[ENA]
¢þ
>WENV180023995
FTIF01006437
[FTIF] metagenome; soil
374
449
+
Lys
CTT
[ENA]
¢þ
>WENV180024114
FTIF01048386
[FTIF] metagenome; soil
3527
3602
+
Lys
CTT
[ENA]
¢þ
>WENV180026345
FTIT01002043
[FTIT] metagenome; soil
2392
2467
+
Lys
CTT
[ENA]
¢þ
>WENV180029207
FTJI01181318
[FTJI] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¢þ
>WENV180029300
FTJI01463382
[FTJI] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¢þ
>WENV180030895
FTJN01380894
[FTJN] metagenome; soil
1023
950
-
Lys
CTT
[ENA]
¢þ
>WENV180030959
FTJN01756822
[FTJN] metagenome; soil
45
118
+
Lys
CTT
[ENA]
¢þ
>WENV180034734
FTKR01197295
[FTKR] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¢þ
>WENV180034827
FTKR01498117
[FTKR] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¢þ
>WENV180344779
OBLL01186047
[OBLL] soil metagenome; soil
181
256
+
Lys
CTT
[ENA]
¢þ
>WENV180690497
OCZS010008601
[OCZS] soil metagenome; soil
1742
1815
+
Lys
CTT
[ENA]
¢þ
>W141282902
JAJB01000033
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
35604
35677
+
Lys
CTT
[ENA]
¡û
>WENV183511368
OMJG01000107
[OMJG] food metagenome; Cotija cheese
19891
19964
+
Lys
CTT
[ENA]
¢þ
>WENV170601251
FUWD010163832
[FUWD] metagenome; unknown
431
506
+
Lys
CTT
[ENA]
¢þ
>WENV170609074
FUWD011236588
[FUWD] metagenome; unknown
125
198
+
Lys
CTT
[ENA]
¢þ
>C181002030
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
251202
251275
+
Lys
CTT
-
¡û
>C181092827
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
1125069
1124996
-
Lys
CTT
-
¡û
>C181143945
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1976767
1976692
-
Lys
CTT
-
¡û
>C181194472
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
1150481
1150408
-
Lys
CTT
-
¡û
>C191046851
CP026734
Actinomycetota
Brevibacterium linens ATCC 19391 [CP026734]
2708766
2708839
+
Lys
CTT
-
¡û
>W1910500011
FXYX01000019
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
6936
7009
+
Lys
CTT
[ENA]
¡û
>W1910500031
FXYY01000002
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
22901
22828
-
Lys
CTT
[ENA]
¡û
>W1910500155
FXZA01000014
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
54555
54628
+
Lys
CTT
[ENA]
¡û
>W1910857493
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
879867
879942
+
Lys
CTT
[ENA]
¡û
>W1910857537
NBXA01000007
Actinomycetota
Subtercola boreus P27444 [NBXA]
194531
194606
+
Lys
CTT
[ENA]
¡û
>W1910857581
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
246676
246751
+
Lys
CTT
[ENA]
¡û
>W1911798577
QYRT01000010
Actinomycetota
Subtercola vilae DB165 [QYRT]
94371
94446
+
Lys
CTT
[ENA]
¡û
>W1911823628
QZVS01000097
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
319157
319082
-
Lys
CTT
[ENA]
¡û
>W1810168760
PJJM01000101
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
24053
24128
+
Lys
CTT
[ENA]
¡û
>W1810240363
PPTG01000021
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
35454
35529
+
Lys
CTT
[ENA]
¡û
>W1810277312
PSTT01000026
Actinomycetota
Subtercola sp. Z020 [PSTT]
4756
4831
+
Lys
CTT
[ENA]
¡û
>W1810569030
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
674875
674800
-
Lys
CTT
[ENA]
¡û
>W1511524516
JYFC01000005
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
280281
280206
-
Lys
CTT
[ENA]
¡û
>W1610722673
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2225215
2225290
+
Lys
CTT
[ENA]
¡û
>W1610734692
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
382341
382266
-
Lys
CTT
[ENA]
¡û
>W1610736329
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
44787
44862
+
Lys
CTT
[ENA]
¡û
>W1710602503
FUYG01000004
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
281261
281336
+
Lys
CTT
[ENA]
¡û
>W1710609286
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
567963
568038
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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