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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.476320 (48 seq.)
>W1711166870
LVVN01000023
Bacillota
Weissella halotolerans [LVVN]
25
99
+
Asn
GTT
[ENA]
¡û
>W1711166872
LVVN01000023
Bacillota
Weissella halotolerans [LVVN]
1411
1487
+
Asn
GTT
[ENA]
¡û
>W131215195
ATUU01000004
Bacillota
Weissella halotolerans DSM 20190 [ATUU]
21
95
+
Asn
GTT
[ENA]
¡û
>W131215197
ATUU01000004
Bacillota
Weissella halotolerans DSM 20190 [ATUU]
1407
1483
+
Asn
GTT
[ENA]
¡û
>C171030917
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
128697
128771
+
Asn
GTT
-
¡û
>C171030919
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
179882
179956
+
Asn
GTT
-
¡û
>W141236467
BBIK01000005
Bacillota
Weissella hellenica [BBIK]
282655
282581
-
Asn
GTT
[ENA]
¡û
>W141236469
BBIK01000005
Bacillota
Weissella hellenica [BBIK]
229912
229837
-
Asn
GTT
[ENA]
¡û
>WENV183511710
OMJG01002422
[OMJG] food metagenome; Cotija cheese
5334
5408
+
Asn
GTT
[ENA]
¢þ
>C181082807
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1525605
1525531
-
Asn
GTT
-
¡û
>C181082809
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1519956
1519881
-
Asn
GTT
-
¡û
>C181143150
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
933126
933200
+
Asn
GTT
-
¡û
>C181143152
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
938873
938947
+
Asn
GTT
-
¡û
>C191013631
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1478379
1478304
-
Asn
GTT
-
¡û
>C191013633
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1477822
1477746
-
Asn
GTT
-
¡û
>W09127218
ACKU01000015
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
7614
7540
-
Asn
GTT
[ENA]
¡û
>W09127220
ACKU01000015
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
1965
1890
-
Asn
GTT
[ENA]
¡û
>W1910177441
BJDT01000002
Bacillota
Weissella sagaensis X0750 [BJDT]
230050
229975
-
Asn
GTT
[ENA]
¡û
>W1910177485
BJDT01000011
Bacillota
Weissella sagaensis X0750 [BJDT]
105
179
+
Asn
GTT
[ENA]
¡û
>W1910177918
BJEC01000032
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7557
7483
-
Asn
GTT
[ENA]
¡û
>W1910177920
BJEC01000032
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
2204
2130
-
Asn
GTT
[ENA]
¡û
>W1910178001
BJEE01000003
Bacillota
Weissella bombi DSM 28794 [BJEE]
240442
240368
-
Asn
GTT
[ENA]
¡û
>W1910178040
BJEE01000011
Bacillota
Weissella bombi DSM 28794 [BJEE]
70
144
+
Asn
GTT
[ENA]
¡û
>W1910178128
BJEG01000002
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
125242
125168
-
Asn
GTT
[ENA]
¡û
>W1910178130
BJEG01000002
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
119778
119704
-
Asn
GTT
[ENA]
¡û
>W1910183995
BJOF01000018
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
17
91
+
Asn
GTT
[ENA]
¡û
>W1910183997
BJOF01000018
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
5481
5555
+
Asn
GTT
[ENA]
¡û
>W1810784487
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
103
178
+
Asn
GTT
[ENA]
¡û
>W1810784489
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
660
736
+
Asn
GTT
[ENA]
¡û
>W1810784812
QRAY01000028
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
110
184
+
Asn
GTT
[ENA]
¡û
>W1810784814
QRAY01000028
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
5463
5537
+
Asn
GTT
[ENA]
¡û
>WENV11100324
AEKF01000075
Food metagenome, Jonggazip commercial cabbage kimchi
504
578
+
Asn
GTT
[ENA]
¡û
>C11123734
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
868619
868693
+
Asn
GTT
[Ensembl]
¡û
>C11123736
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
874386
874460
+
Asn
GTT
[Ensembl]
¡û
>W121081999
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
41365
41439
+
Asn
GTT
[ENA]
¡û
>W121082001
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
47112
47186
+
Asn
GTT
[ENA]
¡û
>W1610514837
FMAO01000017
Bacillota
Weissella bombi [FMAO]
127
201
+
Asn
GTT
[ENA]
¡û
>W1610514843
FMAO01000022
Bacillota
Weissella bombi [FMAO]
16
90
+
Asn
GTT
[ENA]
¡û
>W1610514845
FMAO01000023
Bacillota
Weissella bombi [FMAO]
80
6
-
Asn
GTT
[ENA]
¡û
>W1610515231
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
352
426
+
Asn
GTT
[ENA]
¡û
>W1610515233
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
5816
5890
+
Asn
GTT
[ENA]
¡û
>W1610977410
LVVN01000023
Bacillota
Weissella halotolerans [LVVN]
25
99
+
Asn
GTT
[ENA]
¡û
>W1610977412
LVVN01000023
Bacillota
Weissella halotolerans [LVVN]
1411
1487
+
Asn
GTT
[ENA]
¡û
>W1710500527
FMAO01000017
Bacillota
Weissella bombi [FMAO]
127
201
+
Asn
GTT
[ENA]
¡û
>W1710500533
FMAO01000022
Bacillota
Weissella bombi [FMAO]
16
90
+
Asn
GTT
[ENA]
¡û
>W1710500535
FMAO01000023
Bacillota
Weissella bombi [FMAO]
80
6
-
Asn
GTT
[ENA]
¡û
>W1710500921
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
352
426
+
Asn
GTT
[ENA]
¡û
>W1710500923
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
5816
5890
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK